Experiment: MS_media with m-arsenite 1 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt EX28DRAFT_2398 and EX28DRAFT_2399 overlap by 14 nucleotides EX28DRAFT_2399 and EX28DRAFT_2400 are separated by 108 nucleotides EX28DRAFT_2400 and EX28DRAFT_2401 are separated by 131 nucleotides EX28DRAFT_2401 and EX28DRAFT_2402 are separated by 20 nucleotides
EX28DRAFT_2398: EX28DRAFT_2398 - ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component, at 2,424,367 to 2,425,203
_2398
EX28DRAFT_2399: EX28DRAFT_2399 - ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component, at 2,425,190 to 2,425,894
_2399
EX28DRAFT_2400: EX28DRAFT_2400 - Cold shock proteins, at 2,426,003 to 2,426,476
_2400
EX28DRAFT_2401: EX28DRAFT_2401 - acetoin reductases, at 2,426,608 to 2,427,378
_2401
EX28DRAFT_2402: EX28DRAFT_2402 - acetolactate synthase, large subunit (EC 2.2.1.6), at 2,427,399 to 2,429,078
_2402
Position (kb)
2426
2427 Strain fitness (log2 ratio)
-4
-3
-2
-1
0
1
2 at 2425.034 kb on - strand, within EX28DRAFT_2398 at 2425.095 kb on + strand, within EX28DRAFT_2398 at 2425.700 kb on - strand, within EX28DRAFT_2399 at 2425.763 kb on + strand, within EX28DRAFT_2399 at 2425.763 kb on + strand, within EX28DRAFT_2399 at 2425.764 kb on - strand, within EX28DRAFT_2399 at 2425.764 kb on - strand, within EX28DRAFT_2399 at 2425.801 kb on + strand, within EX28DRAFT_2399 at 2425.802 kb on - strand, within EX28DRAFT_2399 at 2425.802 kb on - strand, within EX28DRAFT_2399 at 2425.802 kb on - strand, within EX28DRAFT_2399 at 2426.008 kb on + strand at 2426.008 kb on + strand at 2426.009 kb on - strand at 2426.267 kb on - strand, within EX28DRAFT_2400 at 2426.429 kb on - strand at 2426.444 kb on - strand at 2426.467 kb on + strand at 2426.468 kb on - strand at 2426.508 kb on - strand at 2426.508 kb on - strand at 2426.529 kb on + strand at 2426.530 kb on - strand at 2426.530 kb on - strand at 2426.599 kb on + strand at 2426.602 kb on + strand at 2426.602 kb on + strand at 2426.613 kb on + strand at 2426.635 kb on + strand at 2426.658 kb on - strand at 2426.682 kb on - strand at 2427.060 kb on - strand, within EX28DRAFT_2401 at 2427.181 kb on + strand, within EX28DRAFT_2401 at 2427.182 kb on - strand, within EX28DRAFT_2401 at 2427.276 kb on + strand, within EX28DRAFT_2401 at 2427.278 kb on + strand, within EX28DRAFT_2401 at 2427.278 kb on + strand, within EX28DRAFT_2401 at 2427.279 kb on - strand, within EX28DRAFT_2401
Per-strain Table
Position Strand Gene LocusTag Fraction MS_media with m-arsenite 1 mM remove 2,425,034 - EX28DRAFT_2398 0.80 +0.5 2,425,095 + EX28DRAFT_2398 0.87 -0.1 2,425,700 - EX28DRAFT_2399 0.72 -0.2 2,425,763 + EX28DRAFT_2399 0.81 +0.7 2,425,763 + EX28DRAFT_2399 0.81 +0.2 2,425,764 - EX28DRAFT_2399 0.81 -0.9 2,425,764 - EX28DRAFT_2399 0.81 +0.2 2,425,801 + EX28DRAFT_2399 0.87 +0.4 2,425,802 - EX28DRAFT_2399 0.87 -0.1 2,425,802 - EX28DRAFT_2399 0.87 +0.2 2,425,802 - EX28DRAFT_2399 0.87 -2.4 2,426,008 + +0.3 2,426,008 + +0.2 2,426,009 - -0.8 2,426,267 - EX28DRAFT_2400 0.56 -4.0 2,426,429 - +0.2 2,426,444 - -0.5 2,426,467 + -1.7 2,426,468 - -1.7 2,426,508 - -0.0 2,426,508 - -0.1 2,426,529 + +0.1 2,426,530 - +0.9 2,426,530 - +0.1 2,426,599 + +0.4 2,426,602 + -0.1 2,426,602 + +0.5 2,426,613 + +0.1 2,426,635 + +0.2 2,426,658 - +0.2 2,426,682 - +0.3 2,427,060 - EX28DRAFT_2401 0.59 +0.4 2,427,181 + EX28DRAFT_2401 0.74 +0.8 2,427,182 - EX28DRAFT_2401 0.74 -0.0 2,427,276 + EX28DRAFT_2401 0.87 +2.1 2,427,278 + EX28DRAFT_2401 0.87 +0.1 2,427,278 + EX28DRAFT_2401 0.87 -1.9 2,427,279 - EX28DRAFT_2401 0.87 -1.5
Or see this region's nucleotide sequence