Experiment: MS_media with m-arsenite 1 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt EX28DRAFT_2383 and EX28DRAFT_2384 are separated by 85 nucleotides EX28DRAFT_2384 and EX28DRAFT_2385 are separated by 114 nucleotides EX28DRAFT_2385 and EX28DRAFT_2386 are separated by 128 nucleotides EX28DRAFT_2386 and EX28DRAFT_2387 are separated by 13 nucleotides
EX28DRAFT_2383: EX28DRAFT_2383 - TonB-dependent siderophore receptor, at 2,406,208 to 2,408,448
_2383
EX28DRAFT_2384: EX28DRAFT_2384 - Phosphopantetheinyl transferase component of siderophore synthetase, at 2,408,534 to 2,409,181
_2384
EX28DRAFT_2385: EX28DRAFT_2385 - choline/carnitine/betaine transport, at 2,409,296 to 2,411,329
_2385
EX28DRAFT_2386: EX28DRAFT_2386 - transcriptional regulator, TetR family, at 2,411,458 to 2,412,045
_2386
EX28DRAFT_2387: EX28DRAFT_2387 - betaine-aldehyde dehydrogenase, at 2,412,059 to 2,413,531
_2387
Position (kb)
2409
2410
2411
2412 Strain fitness (log2 ratio)
-4
-3
-2
-1
0
1
2
3 at 2408.371 kb on + strand at 2408.371 kb on + strand at 2408.371 kb on + strand at 2408.371 kb on + strand at 2408.371 kb on + strand at 2408.371 kb on + strand at 2408.372 kb on - strand at 2408.372 kb on - strand at 2408.372 kb on - strand at 2408.372 kb on - strand at 2408.372 kb on - strand at 2408.372 kb on - strand at 2408.372 kb on - strand at 2408.373 kb on + strand at 2408.373 kb on + strand at 2408.373 kb on + strand at 2408.373 kb on + strand at 2408.374 kb on - strand at 2408.374 kb on - strand at 2408.374 kb on - strand at 2408.374 kb on - strand at 2408.374 kb on - strand at 2408.378 kb on - strand at 2408.394 kb on + strand at 2408.394 kb on + strand at 2408.395 kb on - strand at 2408.395 kb on - strand at 2408.395 kb on - strand at 2408.395 kb on - strand at 2408.395 kb on - strand at 2408.398 kb on + strand at 2408.398 kb on + strand at 2408.398 kb on + strand at 2408.398 kb on + strand at 2408.398 kb on + strand at 2408.398 kb on + strand at 2408.398 kb on + strand at 2408.398 kb on + strand at 2408.399 kb on - strand at 2408.399 kb on - strand at 2408.399 kb on - strand at 2408.401 kb on - strand at 2408.449 kb on + strand at 2408.512 kb on + strand at 2408.844 kb on + strand, within EX28DRAFT_2384 at 2408.849 kb on - strand, within EX28DRAFT_2384 at 2408.977 kb on + strand, within EX28DRAFT_2384 at 2409.222 kb on - strand at 2409.274 kb on + strand at 2409.275 kb on - strand at 2409.276 kb on + strand at 2409.277 kb on - strand at 2409.277 kb on - strand at 2409.277 kb on - strand at 2409.281 kb on + strand at 2409.281 kb on + strand at 2409.281 kb on + strand at 2409.409 kb on - strand at 2409.417 kb on - strand at 2409.466 kb on - strand at 2409.466 kb on - strand at 2409.497 kb on - strand at 2409.497 kb on - strand at 2409.497 kb on - strand at 2409.628 kb on - strand, within EX28DRAFT_2385 at 2409.706 kb on - strand, within EX28DRAFT_2385 at 2409.829 kb on + strand, within EX28DRAFT_2385 at 2409.839 kb on - strand, within EX28DRAFT_2385 at 2409.839 kb on - strand, within EX28DRAFT_2385 at 2409.840 kb on + strand, within EX28DRAFT_2385 at 2409.841 kb on - strand, within EX28DRAFT_2385 at 2409.841 kb on - strand, within EX28DRAFT_2385 at 2410.068 kb on + strand, within EX28DRAFT_2385 at 2410.141 kb on - strand, within EX28DRAFT_2385 at 2410.834 kb on - strand, within EX28DRAFT_2385 at 2410.837 kb on + strand, within EX28DRAFT_2385 at 2410.837 kb on + strand, within EX28DRAFT_2385 at 2410.837 kb on + strand, within EX28DRAFT_2385 at 2410.838 kb on - strand, within EX28DRAFT_2385 at 2410.838 kb on - strand, within EX28DRAFT_2385 at 2410.968 kb on + strand, within EX28DRAFT_2385 at 2410.969 kb on - strand, within EX28DRAFT_2385 at 2410.969 kb on - strand, within EX28DRAFT_2385 at 2411.136 kb on + strand at 2411.137 kb on - strand at 2411.157 kb on + strand at 2411.158 kb on - strand at 2411.161 kb on - strand at 2411.272 kb on + strand at 2411.395 kb on - strand at 2411.421 kb on + strand at 2411.522 kb on + strand, within EX28DRAFT_2386 at 2411.522 kb on + strand, within EX28DRAFT_2386 at 2411.522 kb on + strand, within EX28DRAFT_2386 at 2411.602 kb on + strand, within EX28DRAFT_2386 at 2411.603 kb on - strand, within EX28DRAFT_2386 at 2412.006 kb on + strand at 2412.032 kb on + strand at 2412.059 kb on - strand at 2412.086 kb on + strand at 2412.086 kb on + strand at 2412.087 kb on - strand at 2412.087 kb on - strand at 2412.088 kb on + strand at 2412.088 kb on + strand at 2412.089 kb on - strand at 2412.089 kb on - strand at 2412.089 kb on - strand at 2412.089 kb on - strand at 2412.103 kb on + strand at 2412.103 kb on + strand at 2412.104 kb on - strand at 2412.104 kb on - strand at 2412.104 kb on - strand at 2412.104 kb on - strand at 2412.104 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction MS_media with m-arsenite 1 mM remove 2,408,371 + -0.9 2,408,371 + +0.1 2,408,371 + +0.8 2,408,371 + -0.1 2,408,371 + -1.5 2,408,371 + +0.2 2,408,372 - -0.1 2,408,372 - -1.5 2,408,372 - -0.2 2,408,372 - -3.1 2,408,372 - +0.3 2,408,372 - -0.6 2,408,372 - +1.2 2,408,373 + +0.1 2,408,373 + -0.2 2,408,373 + +0.7 2,408,373 + +0.5 2,408,374 - -0.5 2,408,374 - +0.4 2,408,374 - -0.4 2,408,374 - +0.6 2,408,374 - +1.1 2,408,378 - +0.6 2,408,394 + -0.0 2,408,394 + +0.6 2,408,395 - -0.0 2,408,395 - -0.3 2,408,395 - -0.8 2,408,395 - +0.4 2,408,395 - +0.5 2,408,398 + +0.2 2,408,398 + +0.8 2,408,398 + -0.1 2,408,398 + +2.2 2,408,398 + +2.7 2,408,398 + +2.5 2,408,398 + +0.4 2,408,398 + -0.8 2,408,399 - -0.6 2,408,399 - -1.9 2,408,399 - -1.1 2,408,401 - +0.8 2,408,449 + +0.5 2,408,512 + -0.0 2,408,844 + EX28DRAFT_2384 0.48 -0.3 2,408,849 - EX28DRAFT_2384 0.49 -1.1 2,408,977 + EX28DRAFT_2384 0.68 -0.3 2,409,222 - +0.9 2,409,274 + -2.7 2,409,275 - +0.0 2,409,276 + -0.5 2,409,277 - +0.2 2,409,277 - +1.4 2,409,277 - +0.5 2,409,281 + -0.4 2,409,281 + +0.2 2,409,281 + -0.5 2,409,409 - -0.3 2,409,417 - -4.3 2,409,466 - +0.3 2,409,466 - -3.8 2,409,497 - +0.2 2,409,497 - +0.4 2,409,497 - -1.8 2,409,628 - EX28DRAFT_2385 0.16 +3.1 2,409,706 - EX28DRAFT_2385 0.20 -0.2 2,409,829 + EX28DRAFT_2385 0.26 -0.4 2,409,839 - EX28DRAFT_2385 0.27 -1.4 2,409,839 - EX28DRAFT_2385 0.27 +0.6 2,409,840 + EX28DRAFT_2385 0.27 -2.4 2,409,841 - EX28DRAFT_2385 0.27 -0.1 2,409,841 - EX28DRAFT_2385 0.27 +1.1 2,410,068 + EX28DRAFT_2385 0.38 -0.3 2,410,141 - EX28DRAFT_2385 0.42 +0.6 2,410,834 - EX28DRAFT_2385 0.76 -1.1 2,410,837 + EX28DRAFT_2385 0.76 +1.2 2,410,837 + EX28DRAFT_2385 0.76 +0.6 2,410,837 + EX28DRAFT_2385 0.76 -0.2 2,410,838 - EX28DRAFT_2385 0.76 +2.1 2,410,838 - EX28DRAFT_2385 0.76 -1.8 2,410,968 + EX28DRAFT_2385 0.82 -3.1 2,410,969 - EX28DRAFT_2385 0.82 -2.5 2,410,969 - EX28DRAFT_2385 0.82 -1.3 2,411,136 + +0.0 2,411,137 - +0.9 2,411,157 + -0.0 2,411,158 - -1.2 2,411,161 - -0.1 2,411,272 + -3.4 2,411,395 - +0.1 2,411,421 + +1.6 2,411,522 + EX28DRAFT_2386 0.11 -0.5 2,411,522 + EX28DRAFT_2386 0.11 -3.2 2,411,522 + EX28DRAFT_2386 0.11 -2.6 2,411,602 + EX28DRAFT_2386 0.24 -0.9 2,411,603 - EX28DRAFT_2386 0.25 -0.5 2,412,006 + -3.1 2,412,032 + +0.2 2,412,059 - +0.2 2,412,086 + +1.0 2,412,086 + +0.0 2,412,087 - -1.1 2,412,087 - -0.7 2,412,088 + -0.1 2,412,088 + +0.1 2,412,089 - -0.7 2,412,089 - +0.3 2,412,089 - -1.1 2,412,089 - -0.8 2,412,103 + -1.4 2,412,103 + -0.6 2,412,104 - -0.4 2,412,104 - -0.1 2,412,104 - -0.6 2,412,104 - +0.7 2,412,104 - +0.3
Or see this region's nucleotide sequence