Strain Fitness in Enterobacter asburiae PDN3 around EX28DRAFT_2385

Experiment: MS_media with m-arsenite 1 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntEX28DRAFT_2383 and EX28DRAFT_2384 are separated by 85 nucleotidesEX28DRAFT_2384 and EX28DRAFT_2385 are separated by 114 nucleotidesEX28DRAFT_2385 and EX28DRAFT_2386 are separated by 128 nucleotidesEX28DRAFT_2386 and EX28DRAFT_2387 are separated by 13 nucleotides EX28DRAFT_2383: EX28DRAFT_2383 - TonB-dependent siderophore receptor, at 2,406,208 to 2,408,448 _2383 EX28DRAFT_2384: EX28DRAFT_2384 - Phosphopantetheinyl transferase component of siderophore synthetase, at 2,408,534 to 2,409,181 _2384 EX28DRAFT_2385: EX28DRAFT_2385 - choline/carnitine/betaine transport, at 2,409,296 to 2,411,329 _2385 EX28DRAFT_2386: EX28DRAFT_2386 - transcriptional regulator, TetR family, at 2,411,458 to 2,412,045 _2386 EX28DRAFT_2387: EX28DRAFT_2387 - betaine-aldehyde dehydrogenase, at 2,412,059 to 2,413,531 _2387 Position (kb) 2409 2410 2411 2412Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2 3at 2408.371 kb on + strandat 2408.371 kb on + strandat 2408.371 kb on + strandat 2408.371 kb on + strandat 2408.371 kb on + strandat 2408.371 kb on + strandat 2408.372 kb on - strandat 2408.372 kb on - strandat 2408.372 kb on - strandat 2408.372 kb on - strandat 2408.372 kb on - strandat 2408.372 kb on - strandat 2408.372 kb on - strandat 2408.373 kb on + strandat 2408.373 kb on + strandat 2408.373 kb on + strandat 2408.373 kb on + strandat 2408.374 kb on - strandat 2408.374 kb on - strandat 2408.374 kb on - strandat 2408.374 kb on - strandat 2408.374 kb on - strandat 2408.378 kb on - strandat 2408.394 kb on + strandat 2408.394 kb on + strandat 2408.395 kb on - strandat 2408.395 kb on - strandat 2408.395 kb on - strandat 2408.395 kb on - strandat 2408.395 kb on - strandat 2408.398 kb on + strandat 2408.398 kb on + strandat 2408.398 kb on + strandat 2408.398 kb on + strandat 2408.398 kb on + strandat 2408.398 kb on + strandat 2408.398 kb on + strandat 2408.398 kb on + strandat 2408.399 kb on - strandat 2408.399 kb on - strandat 2408.399 kb on - strandat 2408.401 kb on - strandat 2408.449 kb on + strandat 2408.512 kb on + strandat 2408.844 kb on + strand, within EX28DRAFT_2384at 2408.849 kb on - strand, within EX28DRAFT_2384at 2408.977 kb on + strand, within EX28DRAFT_2384at 2409.222 kb on - strandat 2409.274 kb on + strandat 2409.275 kb on - strandat 2409.276 kb on + strandat 2409.277 kb on - strandat 2409.277 kb on - strandat 2409.277 kb on - strandat 2409.281 kb on + strandat 2409.281 kb on + strandat 2409.281 kb on + strandat 2409.409 kb on - strandat 2409.417 kb on - strandat 2409.466 kb on - strandat 2409.466 kb on - strandat 2409.497 kb on - strandat 2409.497 kb on - strandat 2409.497 kb on - strandat 2409.628 kb on - strand, within EX28DRAFT_2385at 2409.706 kb on - strand, within EX28DRAFT_2385at 2409.829 kb on + strand, within EX28DRAFT_2385at 2409.839 kb on - strand, within EX28DRAFT_2385at 2409.839 kb on - strand, within EX28DRAFT_2385at 2409.840 kb on + strand, within EX28DRAFT_2385at 2409.841 kb on - strand, within EX28DRAFT_2385at 2409.841 kb on - strand, within EX28DRAFT_2385at 2410.068 kb on + strand, within EX28DRAFT_2385at 2410.141 kb on - strand, within EX28DRAFT_2385at 2410.834 kb on - strand, within EX28DRAFT_2385at 2410.837 kb on + strand, within EX28DRAFT_2385at 2410.837 kb on + strand, within EX28DRAFT_2385at 2410.837 kb on + strand, within EX28DRAFT_2385at 2410.838 kb on - strand, within EX28DRAFT_2385at 2410.838 kb on - strand, within EX28DRAFT_2385at 2410.968 kb on + strand, within EX28DRAFT_2385at 2410.969 kb on - strand, within EX28DRAFT_2385at 2410.969 kb on - strand, within EX28DRAFT_2385at 2411.136 kb on + strandat 2411.137 kb on - strandat 2411.157 kb on + strandat 2411.158 kb on - strandat 2411.161 kb on - strandat 2411.272 kb on + strandat 2411.395 kb on - strandat 2411.421 kb on + strandat 2411.522 kb on + strand, within EX28DRAFT_2386at 2411.522 kb on + strand, within EX28DRAFT_2386at 2411.522 kb on + strand, within EX28DRAFT_2386at 2411.602 kb on + strand, within EX28DRAFT_2386at 2411.603 kb on - strand, within EX28DRAFT_2386at 2412.006 kb on + strandat 2412.032 kb on + strandat 2412.059 kb on - strandat 2412.086 kb on + strandat 2412.086 kb on + strandat 2412.087 kb on - strandat 2412.087 kb on - strandat 2412.088 kb on + strandat 2412.088 kb on + strandat 2412.089 kb on - strandat 2412.089 kb on - strandat 2412.089 kb on - strandat 2412.089 kb on - strandat 2412.103 kb on + strandat 2412.103 kb on + strandat 2412.104 kb on - strandat 2412.104 kb on - strandat 2412.104 kb on - strandat 2412.104 kb on - strandat 2412.104 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction MS_media with m-arsenite 1 mM
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2,408,371 + -0.9
2,408,371 + +0.1
2,408,371 + +0.8
2,408,371 + -0.1
2,408,371 + -1.5
2,408,371 + +0.2
2,408,372 - -0.1
2,408,372 - -1.5
2,408,372 - -0.2
2,408,372 - -3.1
2,408,372 - +0.3
2,408,372 - -0.6
2,408,372 - +1.2
2,408,373 + +0.1
2,408,373 + -0.2
2,408,373 + +0.7
2,408,373 + +0.5
2,408,374 - -0.5
2,408,374 - +0.4
2,408,374 - -0.4
2,408,374 - +0.6
2,408,374 - +1.1
2,408,378 - +0.6
2,408,394 + -0.0
2,408,394 + +0.6
2,408,395 - -0.0
2,408,395 - -0.3
2,408,395 - -0.8
2,408,395 - +0.4
2,408,395 - +0.5
2,408,398 + +0.2
2,408,398 + +0.8
2,408,398 + -0.1
2,408,398 + +2.2
2,408,398 + +2.7
2,408,398 + +2.5
2,408,398 + +0.4
2,408,398 + -0.8
2,408,399 - -0.6
2,408,399 - -1.9
2,408,399 - -1.1
2,408,401 - +0.8
2,408,449 + +0.5
2,408,512 + -0.0
2,408,844 + EX28DRAFT_2384 0.48 -0.3
2,408,849 - EX28DRAFT_2384 0.49 -1.1
2,408,977 + EX28DRAFT_2384 0.68 -0.3
2,409,222 - +0.9
2,409,274 + -2.7
2,409,275 - +0.0
2,409,276 + -0.5
2,409,277 - +0.2
2,409,277 - +1.4
2,409,277 - +0.5
2,409,281 + -0.4
2,409,281 + +0.2
2,409,281 + -0.5
2,409,409 - -0.3
2,409,417 - -4.3
2,409,466 - +0.3
2,409,466 - -3.8
2,409,497 - +0.2
2,409,497 - +0.4
2,409,497 - -1.8
2,409,628 - EX28DRAFT_2385 0.16 +3.1
2,409,706 - EX28DRAFT_2385 0.20 -0.2
2,409,829 + EX28DRAFT_2385 0.26 -0.4
2,409,839 - EX28DRAFT_2385 0.27 -1.4
2,409,839 - EX28DRAFT_2385 0.27 +0.6
2,409,840 + EX28DRAFT_2385 0.27 -2.4
2,409,841 - EX28DRAFT_2385 0.27 -0.1
2,409,841 - EX28DRAFT_2385 0.27 +1.1
2,410,068 + EX28DRAFT_2385 0.38 -0.3
2,410,141 - EX28DRAFT_2385 0.42 +0.6
2,410,834 - EX28DRAFT_2385 0.76 -1.1
2,410,837 + EX28DRAFT_2385 0.76 +1.2
2,410,837 + EX28DRAFT_2385 0.76 +0.6
2,410,837 + EX28DRAFT_2385 0.76 -0.2
2,410,838 - EX28DRAFT_2385 0.76 +2.1
2,410,838 - EX28DRAFT_2385 0.76 -1.8
2,410,968 + EX28DRAFT_2385 0.82 -3.1
2,410,969 - EX28DRAFT_2385 0.82 -2.5
2,410,969 - EX28DRAFT_2385 0.82 -1.3
2,411,136 + +0.0
2,411,137 - +0.9
2,411,157 + -0.0
2,411,158 - -1.2
2,411,161 - -0.1
2,411,272 + -3.4
2,411,395 - +0.1
2,411,421 + +1.6
2,411,522 + EX28DRAFT_2386 0.11 -0.5
2,411,522 + EX28DRAFT_2386 0.11 -3.2
2,411,522 + EX28DRAFT_2386 0.11 -2.6
2,411,602 + EX28DRAFT_2386 0.24 -0.9
2,411,603 - EX28DRAFT_2386 0.25 -0.5
2,412,006 + -3.1
2,412,032 + +0.2
2,412,059 - +0.2
2,412,086 + +1.0
2,412,086 + +0.0
2,412,087 - -1.1
2,412,087 - -0.7
2,412,088 + -0.1
2,412,088 + +0.1
2,412,089 - -0.7
2,412,089 - +0.3
2,412,089 - -1.1
2,412,089 - -0.8
2,412,103 + -1.4
2,412,103 + -0.6
2,412,104 - -0.4
2,412,104 - -0.1
2,412,104 - -0.6
2,412,104 - +0.7
2,412,104 - +0.3

Or see this region's nucleotide sequence