Strain Fitness in Enterobacter asburiae PDN3 around EX28DRAFT_2340

Experiment: MS_media with m-arsenite 1 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntEX28DRAFT_2337 and EX28DRAFT_2338 are separated by 67 nucleotidesEX28DRAFT_2338 and EX28DRAFT_2339 are separated by 166 nucleotidesEX28DRAFT_2339 and EX28DRAFT_2340 overlap by 365 nucleotidesEX28DRAFT_2340 and EX28DRAFT_2341 are separated by 190 nucleotides EX28DRAFT_2337: EX28DRAFT_2337 - Predicted amidohydrolase, at 2,361,456 to 2,362,244 _2337 EX28DRAFT_2338: EX28DRAFT_2338 - protein CrcB, at 2,362,312 to 2,362,695 _2338 EX28DRAFT_2339: EX28DRAFT_2339 - RNA, at 2,362,862 to 2,363,279 _2339 EX28DRAFT_2340: EX28DRAFT_2340 - Cold shock proteins, at 2,362,915 to 2,363,124 _2340 EX28DRAFT_2341: EX28DRAFT_2341 - Antimicrobial peptide resistance and lipid A acylation protein PagP, at 2,363,315 to 2,363,932 _2341 Position (kb) 2362 2363 2364Strain fitness (log2 ratio) -5 -4 -3 -2 -1 0 1 2 3at 2361.990 kb on + strand, within EX28DRAFT_2337at 2361.991 kb on - strand, within EX28DRAFT_2337at 2361.991 kb on - strand, within EX28DRAFT_2337at 2361.992 kb on + strand, within EX28DRAFT_2337at 2361.992 kb on + strand, within EX28DRAFT_2337at 2361.993 kb on - strand, within EX28DRAFT_2337at 2362.003 kb on - strand, within EX28DRAFT_2337at 2362.020 kb on - strand, within EX28DRAFT_2337at 2362.020 kb on - strand, within EX28DRAFT_2337at 2362.104 kb on - strand, within EX28DRAFT_2337at 2362.236 kb on + strandat 2362.236 kb on + strandat 2362.236 kb on + strandat 2362.237 kb on - strandat 2362.240 kb on + strandat 2362.240 kb on + strandat 2362.240 kb on + strandat 2362.240 kb on + strandat 2362.240 kb on + strandat 2362.241 kb on - strandat 2362.241 kb on - strandat 2362.241 kb on - strandat 2362.241 kb on - strandat 2362.241 kb on - strandat 2362.241 kb on - strandat 2362.244 kb on + strandat 2362.244 kb on + strandat 2362.244 kb on + strandat 2362.244 kb on + strandat 2362.244 kb on + strandat 2362.244 kb on + strandat 2362.244 kb on + strandat 2362.244 kb on + strandat 2362.245 kb on - strandat 2362.245 kb on - strandat 2362.245 kb on - strandat 2362.245 kb on - strandat 2362.245 kb on - strandat 2362.245 kb on - strandat 2362.245 kb on - strandat 2362.286 kb on + strandat 2362.286 kb on + strandat 2362.287 kb on - strandat 2362.287 kb on - strandat 2362.304 kb on + strandat 2362.305 kb on - strandat 2362.317 kb on - strandat 2362.317 kb on - strandat 2362.322 kb on + strandat 2362.339 kb on - strandat 2362.380 kb on + strand, within EX28DRAFT_2338at 2362.414 kb on - strand, within EX28DRAFT_2338at 2362.617 kb on + strand, within EX28DRAFT_2338at 2362.629 kb on + strand, within EX28DRAFT_2338at 2362.629 kb on + strand, within EX28DRAFT_2338at 2362.629 kb on + strand, within EX28DRAFT_2338at 2362.839 kb on + strandat 2362.839 kb on + strandat 2363.118 kb on + strandat 2363.138 kb on - strandat 2363.138 kb on - strandat 2363.176 kb on + strandat 2363.265 kb on + strandat 2363.289 kb on - strandat 2363.302 kb on - strandat 2363.343 kb on + strandat 2363.362 kb on - strandat 2363.362 kb on - strandat 2363.362 kb on - strandat 2363.362 kb on - strandat 2363.377 kb on - strand, within EX28DRAFT_2341at 2363.377 kb on - strand, within EX28DRAFT_2341at 2363.377 kb on - strand, within EX28DRAFT_2341at 2363.377 kb on - strand, within EX28DRAFT_2341at 2363.445 kb on + strand, within EX28DRAFT_2341at 2363.541 kb on + strand, within EX28DRAFT_2341at 2363.566 kb on + strand, within EX28DRAFT_2341at 2363.592 kb on + strand, within EX28DRAFT_2341at 2363.593 kb on - strand, within EX28DRAFT_2341at 2363.593 kb on - strand, within EX28DRAFT_2341at 2363.665 kb on - strand, within EX28DRAFT_2341at 2363.665 kb on - strand, within EX28DRAFT_2341at 2363.665 kb on - strand, within EX28DRAFT_2341at 2363.712 kb on - strand, within EX28DRAFT_2341at 2363.724 kb on + strand, within EX28DRAFT_2341at 2363.724 kb on + strand, within EX28DRAFT_2341at 2363.724 kb on + strand, within EX28DRAFT_2341at 2363.733 kb on + strand, within EX28DRAFT_2341at 2363.838 kb on - strand, within EX28DRAFT_2341at 2363.878 kb on + strandat 2363.908 kb on + strandat 2363.937 kb on + strandat 2363.938 kb on - strandat 2363.978 kb on + strandat 2364.057 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction MS_media with m-arsenite 1 mM
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2,361,990 + EX28DRAFT_2337 0.68 +1.2
2,361,991 - EX28DRAFT_2337 0.68 +1.3
2,361,991 - EX28DRAFT_2337 0.68 +1.0
2,361,992 + EX28DRAFT_2337 0.68 +0.9
2,361,992 + EX28DRAFT_2337 0.68 -0.3
2,361,993 - EX28DRAFT_2337 0.68 -0.1
2,362,003 - EX28DRAFT_2337 0.69 -1.0
2,362,020 - EX28DRAFT_2337 0.71 -2.7
2,362,020 - EX28DRAFT_2337 0.71 -1.3
2,362,104 - EX28DRAFT_2337 0.82 -0.1
2,362,236 + +0.5
2,362,236 + +0.5
2,362,236 + +1.2
2,362,237 - +0.1
2,362,240 + +0.2
2,362,240 + -0.6
2,362,240 + -0.5
2,362,240 + -0.3
2,362,240 + +1.4
2,362,241 - +0.0
2,362,241 - -0.2
2,362,241 - -0.5
2,362,241 - +0.3
2,362,241 - +0.2
2,362,241 - -1.6
2,362,244 + -4.8
2,362,244 + +0.1
2,362,244 + +0.2
2,362,244 + +1.1
2,362,244 + -0.1
2,362,244 + +0.4
2,362,244 + -0.2
2,362,244 + +0.6
2,362,245 - -0.3
2,362,245 - +1.5
2,362,245 - -1.0
2,362,245 - -0.5
2,362,245 - +0.8
2,362,245 - -0.9
2,362,245 - -0.3
2,362,286 + -0.4
2,362,286 + +0.2
2,362,287 - -0.2
2,362,287 - -0.3
2,362,304 + +0.1
2,362,305 - +1.6
2,362,317 - -1.4
2,362,317 - +1.3
2,362,322 + -3.1
2,362,339 - -0.4
2,362,380 + EX28DRAFT_2338 0.18 +2.4
2,362,414 - EX28DRAFT_2338 0.27 +0.2
2,362,617 + EX28DRAFT_2338 0.79 -3.5
2,362,629 + EX28DRAFT_2338 0.83 -0.3
2,362,629 + EX28DRAFT_2338 0.83 +0.7
2,362,629 + EX28DRAFT_2338 0.83 -0.2
2,362,839 + +1.5
2,362,839 + +0.1
2,363,118 + +0.4
2,363,138 - +0.9
2,363,138 - +0.1
2,363,176 + -0.7
2,363,265 + -1.9
2,363,289 - +0.8
2,363,302 - -0.0
2,363,343 + -0.4
2,363,362 - +0.1
2,363,362 - -0.0
2,363,362 - +1.6
2,363,362 - +0.4
2,363,377 - EX28DRAFT_2341 0.10 +0.0
2,363,377 - EX28DRAFT_2341 0.10 +0.1
2,363,377 - EX28DRAFT_2341 0.10 +0.1
2,363,377 - EX28DRAFT_2341 0.10 -0.3
2,363,445 + EX28DRAFT_2341 0.21 +3.4
2,363,541 + EX28DRAFT_2341 0.37 -0.7
2,363,566 + EX28DRAFT_2341 0.41 -0.1
2,363,592 + EX28DRAFT_2341 0.45 -1.2
2,363,593 - EX28DRAFT_2341 0.45 -1.5
2,363,593 - EX28DRAFT_2341 0.45 -0.8
2,363,665 - EX28DRAFT_2341 0.57 -0.4
2,363,665 - EX28DRAFT_2341 0.57 +0.1
2,363,665 - EX28DRAFT_2341 0.57 -0.4
2,363,712 - EX28DRAFT_2341 0.64 -0.1
2,363,724 + EX28DRAFT_2341 0.66 +0.0
2,363,724 + EX28DRAFT_2341 0.66 -1.0
2,363,724 + EX28DRAFT_2341 0.66 +0.2
2,363,733 + EX28DRAFT_2341 0.68 +0.1
2,363,838 - EX28DRAFT_2341 0.85 -0.2
2,363,878 + +0.6
2,363,908 + -0.3
2,363,937 + -0.4
2,363,938 - -1.0
2,363,978 + +0.9
2,364,057 - +0.0

Or see this region's nucleotide sequence