Experiment: MS_media with m-arsenite 1 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt EX28DRAFT_2235 and EX28DRAFT_2236 are separated by 201 nucleotides EX28DRAFT_2236 and EX28DRAFT_2237 are separated by 9 nucleotides
EX28DRAFT_2235: EX28DRAFT_2235 - ABC-type molybdenum transport system, ATPase component/photorepair protein PhrA, at 2,258,008 to 2,259,480
_2235
EX28DRAFT_2236: EX28DRAFT_2236 - UDP-glucose-4-epimerase GalE, at 2,259,682 to 2,260,698
_2236
EX28DRAFT_2237: EX28DRAFT_2237 - galactose-1-phosphate uridylyltransferase, family 1, at 2,260,708 to 2,261,754
_2237
Position (kb)
2259
2260
2261 Strain fitness (log2 ratio)
-4
-3
-2
-1
0
1
2 at 2258.724 kb on + strand, within EX28DRAFT_2235 at 2258.726 kb on + strand, within EX28DRAFT_2235 at 2258.815 kb on + strand, within EX28DRAFT_2235 at 2258.844 kb on + strand, within EX28DRAFT_2235 at 2258.949 kb on + strand, within EX28DRAFT_2235 at 2258.949 kb on + strand, within EX28DRAFT_2235 at 2259.019 kb on - strand, within EX28DRAFT_2235 at 2259.095 kb on - strand, within EX28DRAFT_2235 at 2259.112 kb on - strand, within EX28DRAFT_2235 at 2259.207 kb on + strand, within EX28DRAFT_2235 at 2259.208 kb on - strand, within EX28DRAFT_2235 at 2259.268 kb on - strand, within EX28DRAFT_2235 at 2259.268 kb on - strand, within EX28DRAFT_2235 at 2259.348 kb on + strand at 2259.348 kb on + strand at 2259.348 kb on + strand at 2259.349 kb on - strand at 2259.349 kb on - strand at 2259.514 kb on - strand at 2259.514 kb on - strand at 2259.526 kb on + strand at 2259.526 kb on + strand at 2259.527 kb on - strand at 2259.547 kb on + strand at 2259.547 kb on + strand at 2259.547 kb on + strand at 2259.568 kb on - strand at 2259.645 kb on - strand at 2259.651 kb on - strand at 2259.658 kb on - strand at 2259.662 kb on + strand at 2259.681 kb on + strand at 2259.681 kb on + strand at 2259.716 kb on + strand at 2259.727 kb on - strand at 2260.039 kb on - strand, within EX28DRAFT_2236 at 2260.044 kb on + strand, within EX28DRAFT_2236 at 2260.045 kb on - strand, within EX28DRAFT_2236 at 2260.087 kb on + strand, within EX28DRAFT_2236 at 2260.288 kb on + strand, within EX28DRAFT_2236 at 2260.288 kb on + strand, within EX28DRAFT_2236 at 2260.288 kb on + strand, within EX28DRAFT_2236 at 2260.288 kb on + strand, within EX28DRAFT_2236 at 2260.289 kb on - strand, within EX28DRAFT_2236 at 2260.378 kb on + strand, within EX28DRAFT_2236 at 2260.379 kb on - strand, within EX28DRAFT_2236 at 2260.448 kb on + strand, within EX28DRAFT_2236 at 2260.453 kb on - strand, within EX28DRAFT_2236 at 2260.456 kb on + strand, within EX28DRAFT_2236 at 2260.456 kb on + strand, within EX28DRAFT_2236 at 2260.456 kb on + strand, within EX28DRAFT_2236 at 2260.456 kb on + strand, within EX28DRAFT_2236 at 2260.457 kb on - strand, within EX28DRAFT_2236 at 2260.457 kb on - strand, within EX28DRAFT_2236 at 2260.457 kb on - strand, within EX28DRAFT_2236 at 2260.537 kb on + strand, within EX28DRAFT_2236 at 2260.538 kb on - strand, within EX28DRAFT_2236 at 2260.719 kb on + strand at 2260.719 kb on + strand at 2260.750 kb on - strand at 2260.912 kb on + strand, within EX28DRAFT_2237 at 2261.140 kb on + strand, within EX28DRAFT_2237 at 2261.272 kb on + strand, within EX28DRAFT_2237 at 2261.309 kb on - strand, within EX28DRAFT_2237 at 2261.643 kb on + strand, within EX28DRAFT_2237 at 2261.643 kb on + strand, within EX28DRAFT_2237 at 2261.644 kb on - strand, within EX28DRAFT_2237 at 2261.653 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction MS_media with m-arsenite 1 mM remove 2,258,724 + EX28DRAFT_2235 0.49 +1.0 2,258,726 + EX28DRAFT_2235 0.49 +1.7 2,258,815 + EX28DRAFT_2235 0.55 -1.8 2,258,844 + EX28DRAFT_2235 0.57 +2.2 2,258,949 + EX28DRAFT_2235 0.64 +0.1 2,258,949 + EX28DRAFT_2235 0.64 +0.3 2,259,019 - EX28DRAFT_2235 0.69 -0.5 2,259,095 - EX28DRAFT_2235 0.74 -0.3 2,259,112 - EX28DRAFT_2235 0.75 +2.3 2,259,207 + EX28DRAFT_2235 0.81 -0.7 2,259,208 - EX28DRAFT_2235 0.81 -0.2 2,259,268 - EX28DRAFT_2235 0.86 -0.3 2,259,268 - EX28DRAFT_2235 0.86 +0.6 2,259,348 + +0.6 2,259,348 + +0.0 2,259,348 + +0.1 2,259,349 - -3.3 2,259,349 - -0.0 2,259,514 - -0.2 2,259,514 - -1.9 2,259,526 + -0.0 2,259,526 + +0.6 2,259,527 - -2.0 2,259,547 + -1.1 2,259,547 + +1.0 2,259,547 + -1.5 2,259,568 - +1.9 2,259,645 - +0.3 2,259,651 - +0.7 2,259,658 - -1.2 2,259,662 + +0.3 2,259,681 + +1.1 2,259,681 + -3.1 2,259,716 + -1.9 2,259,727 - -0.1 2,260,039 - EX28DRAFT_2236 0.35 +0.1 2,260,044 + EX28DRAFT_2236 0.36 -0.1 2,260,045 - EX28DRAFT_2236 0.36 -0.7 2,260,087 + EX28DRAFT_2236 0.40 -0.1 2,260,288 + EX28DRAFT_2236 0.60 +0.3 2,260,288 + EX28DRAFT_2236 0.60 +0.5 2,260,288 + EX28DRAFT_2236 0.60 +1.1 2,260,288 + EX28DRAFT_2236 0.60 -1.1 2,260,289 - EX28DRAFT_2236 0.60 -0.3 2,260,378 + EX28DRAFT_2236 0.68 +0.5 2,260,379 - EX28DRAFT_2236 0.69 +2.3 2,260,448 + EX28DRAFT_2236 0.75 -4.5 2,260,453 - EX28DRAFT_2236 0.76 +0.4 2,260,456 + EX28DRAFT_2236 0.76 +0.9 2,260,456 + EX28DRAFT_2236 0.76 -0.6 2,260,456 + EX28DRAFT_2236 0.76 +0.4 2,260,456 + EX28DRAFT_2236 0.76 +0.7 2,260,457 - EX28DRAFT_2236 0.76 +1.4 2,260,457 - EX28DRAFT_2236 0.76 -0.4 2,260,457 - EX28DRAFT_2236 0.76 +0.9 2,260,537 + EX28DRAFT_2236 0.84 +1.2 2,260,538 - EX28DRAFT_2236 0.84 -0.2 2,260,719 + +0.9 2,260,719 + -0.4 2,260,750 - -0.5 2,260,912 + EX28DRAFT_2237 0.19 +0.8 2,261,140 + EX28DRAFT_2237 0.41 +0.2 2,261,272 + EX28DRAFT_2237 0.54 +1.0 2,261,309 - EX28DRAFT_2237 0.57 +0.5 2,261,643 + EX28DRAFT_2237 0.89 +0.3 2,261,643 + EX28DRAFT_2237 0.89 +1.9 2,261,644 - EX28DRAFT_2237 0.89 +0.3 2,261,653 + -0.1
Or see this region's nucleotide sequence