Experiment: MS_media with m-arsenite 1 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt EX28DRAFT_2217 and EX28DRAFT_2218 are separated by 48 nucleotides EX28DRAFT_2218 and EX28DRAFT_2219 are separated by 103 nucleotides
EX28DRAFT_2217: EX28DRAFT_2217 - adenosylmethionine-8-amino-7-oxononanoate transaminase, at 2,240,268 to 2,241,575
_2217
EX28DRAFT_2218: EX28DRAFT_2218 - Raf kinase inhibitor-like protein, YbhB/YbcL family, at 2,241,624 to 2,242,100
_2218
EX28DRAFT_2219: EX28DRAFT_2219 - histidine ammonia-lyase (EC 4.3.1.3), at 2,242,204 to 2,243,724
_2219
Position (kb)
2241
2242
2243 Strain fitness (log2 ratio)
-5
-4
-3
-2
-1
0
1 at 2240.662 kb on - strand, within EX28DRAFT_2217 at 2240.716 kb on - strand, within EX28DRAFT_2217 at 2240.716 kb on - strand, within EX28DRAFT_2217 at 2240.953 kb on - strand, within EX28DRAFT_2217 at 2241.197 kb on + strand, within EX28DRAFT_2217 at 2241.198 kb on - strand, within EX28DRAFT_2217 at 2241.215 kb on + strand, within EX28DRAFT_2217 at 2241.473 kb on + strand at 2241.473 kb on + strand at 2241.474 kb on - strand at 2241.474 kb on - strand at 2241.474 kb on - strand at 2241.474 kb on - strand at 2241.478 kb on - strand at 2241.478 kb on - strand at 2241.500 kb on + strand at 2241.573 kb on + strand at 2241.573 kb on + strand at 2241.573 kb on + strand at 2241.573 kb on + strand at 2241.573 kb on + strand at 2241.573 kb on + strand at 2241.574 kb on - strand at 2241.580 kb on - strand at 2241.586 kb on + strand at 2241.587 kb on - strand at 2241.587 kb on - strand at 2241.710 kb on + strand, within EX28DRAFT_2218 at 2241.710 kb on + strand, within EX28DRAFT_2218 at 2241.766 kb on + strand, within EX28DRAFT_2218 at 2241.921 kb on - strand, within EX28DRAFT_2218 at 2241.969 kb on + strand, within EX28DRAFT_2218 at 2241.970 kb on - strand, within EX28DRAFT_2218 at 2241.971 kb on + strand, within EX28DRAFT_2218 at 2241.971 kb on + strand, within EX28DRAFT_2218 at 2241.971 kb on + strand, within EX28DRAFT_2218 at 2242.046 kb on + strand, within EX28DRAFT_2218 at 2242.046 kb on + strand, within EX28DRAFT_2218 at 2242.092 kb on + strand at 2242.092 kb on + strand at 2242.093 kb on - strand at 2242.093 kb on - strand at 2242.098 kb on + strand at 2242.099 kb on - strand at 2242.099 kb on - strand at 2242.102 kb on - strand at 2242.219 kb on + strand at 2242.220 kb on - strand at 2242.578 kb on + strand, within EX28DRAFT_2219 at 2242.579 kb on - strand, within EX28DRAFT_2219 at 2242.579 kb on - strand, within EX28DRAFT_2219 at 2242.632 kb on + strand, within EX28DRAFT_2219 at 2242.632 kb on + strand, within EX28DRAFT_2219 at 2242.633 kb on - strand, within EX28DRAFT_2219 at 2242.633 kb on - strand, within EX28DRAFT_2219 at 2242.633 kb on - strand, within EX28DRAFT_2219 at 2242.633 kb on - strand, within EX28DRAFT_2219 at 2242.633 kb on - strand, within EX28DRAFT_2219 at 2242.633 kb on - strand, within EX28DRAFT_2219 at 2242.639 kb on - strand, within EX28DRAFT_2219 at 2242.941 kb on + strand, within EX28DRAFT_2219 at 2242.956 kb on - strand, within EX28DRAFT_2219
Per-strain Table
Position Strand Gene LocusTag Fraction MS_media with m-arsenite 1 mM remove 2,240,662 - EX28DRAFT_2217 0.30 -0.6 2,240,716 - EX28DRAFT_2217 0.34 -2.0 2,240,716 - EX28DRAFT_2217 0.34 -1.5 2,240,953 - EX28DRAFT_2217 0.52 -4.8 2,241,197 + EX28DRAFT_2217 0.71 -1.2 2,241,198 - EX28DRAFT_2217 0.71 -1.0 2,241,215 + EX28DRAFT_2217 0.72 -4.8 2,241,473 + -3.1 2,241,473 + -4.5 2,241,474 - -0.1 2,241,474 - -0.6 2,241,474 - -5.1 2,241,474 - -1.9 2,241,478 - -1.8 2,241,478 - -1.3 2,241,500 + -1.3 2,241,573 + -0.1 2,241,573 + -2.9 2,241,573 + -0.8 2,241,573 + -0.1 2,241,573 + +0.6 2,241,573 + +0.2 2,241,574 - +1.0 2,241,580 - +0.2 2,241,586 + +0.0 2,241,587 - +0.7 2,241,587 - +1.5 2,241,710 + EX28DRAFT_2218 0.18 +0.3 2,241,710 + EX28DRAFT_2218 0.18 -0.8 2,241,766 + EX28DRAFT_2218 0.30 +0.8 2,241,921 - EX28DRAFT_2218 0.62 -0.0 2,241,969 + EX28DRAFT_2218 0.72 +0.3 2,241,970 - EX28DRAFT_2218 0.73 -4.2 2,241,971 + EX28DRAFT_2218 0.73 -1.2 2,241,971 + EX28DRAFT_2218 0.73 -4.1 2,241,971 + EX28DRAFT_2218 0.73 +0.4 2,242,046 + EX28DRAFT_2218 0.88 +1.7 2,242,046 + EX28DRAFT_2218 0.88 +0.9 2,242,092 + +0.5 2,242,092 + +1.4 2,242,093 - -2.8 2,242,093 - +0.3 2,242,098 + -0.2 2,242,099 - +0.4 2,242,099 - -3.4 2,242,102 - +0.4 2,242,219 + -0.9 2,242,220 - -0.2 2,242,578 + EX28DRAFT_2219 0.25 -1.6 2,242,579 - EX28DRAFT_2219 0.25 -1.1 2,242,579 - EX28DRAFT_2219 0.25 +0.2 2,242,632 + EX28DRAFT_2219 0.28 -0.2 2,242,632 + EX28DRAFT_2219 0.28 -3.6 2,242,633 - EX28DRAFT_2219 0.28 +0.3 2,242,633 - EX28DRAFT_2219 0.28 +0.3 2,242,633 - EX28DRAFT_2219 0.28 -0.4 2,242,633 - EX28DRAFT_2219 0.28 -1.3 2,242,633 - EX28DRAFT_2219 0.28 +0.7 2,242,633 - EX28DRAFT_2219 0.28 +0.8 2,242,639 - EX28DRAFT_2219 0.29 -0.1 2,242,941 + EX28DRAFT_2219 0.48 -0.4 2,242,956 - EX28DRAFT_2219 0.49 -1.1
Or see this region's nucleotide sequence