Experiment: MS_media with m-arsenite 1 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt EX28DRAFT_2205 and EX28DRAFT_2206 are separated by 1 nucleotides EX28DRAFT_2206 and EX28DRAFT_2207 overlap by 8 nucleotides EX28DRAFT_2207 and EX28DRAFT_2208 are separated by 3 nucleotides EX28DRAFT_2208 and EX28DRAFT_2209 are separated by 24 nucleotides
EX28DRAFT_2205: EX28DRAFT_2205 - Molybdopterin converting factor, large subunit, at 2,229,084 to 2,229,536
_2205
EX28DRAFT_2206: EX28DRAFT_2206 - molybdopterin converting factor, subunit 1, non-archaeal, at 2,229,538 to 2,229,783
_2206
EX28DRAFT_2207: EX28DRAFT_2207 - molybdenum cofactor biosynthesis protein MoaC, at 2,229,776 to 2,230,261
_2207
EX28DRAFT_2208: EX28DRAFT_2208 - molybdenum cofactor biosynthesis protein B, proteobacterial, at 2,230,265 to 2,230,777
_2208
EX28DRAFT_2209: EX28DRAFT_2209 - molybdenum cofactor biosynthesis protein A, bacterial, at 2,230,802 to 2,231,791
_2209
Position (kb)
2230
2231 Strain fitness (log2 ratio)
-5
-4
-3
-2
-1
0
1
2 at 2229.481 kb on + strand, within EX28DRAFT_2205 at 2229.492 kb on + strand at 2229.778 kb on - strand at 2229.796 kb on + strand at 2229.853 kb on + strand, within EX28DRAFT_2207 at 2229.853 kb on + strand, within EX28DRAFT_2207 at 2229.853 kb on + strand, within EX28DRAFT_2207 at 2229.854 kb on - strand, within EX28DRAFT_2207 at 2229.883 kb on - strand, within EX28DRAFT_2207 at 2229.883 kb on - strand, within EX28DRAFT_2207 at 2229.947 kb on + strand, within EX28DRAFT_2207 at 2230.220 kb on - strand at 2230.261 kb on + strand at 2230.261 kb on + strand at 2230.261 kb on + strand at 2230.261 kb on + strand at 2230.261 kb on + strand at 2230.261 kb on + strand at 2230.261 kb on + strand at 2230.261 kb on + strand at 2230.262 kb on - strand at 2230.262 kb on - strand at 2230.262 kb on - strand at 2230.262 kb on - strand at 2230.266 kb on + strand at 2230.266 kb on + strand at 2230.267 kb on - strand at 2230.267 kb on - strand at 2230.291 kb on + strand at 2230.481 kb on + strand, within EX28DRAFT_2208 at 2230.481 kb on + strand, within EX28DRAFT_2208 at 2230.697 kb on - strand, within EX28DRAFT_2208 at 2230.697 kb on - strand, within EX28DRAFT_2208 at 2230.735 kb on + strand at 2230.777 kb on + strand at 2230.778 kb on - strand at 2230.778 kb on - strand at 2230.832 kb on - strand at 2230.834 kb on + strand at 2230.949 kb on + strand, within EX28DRAFT_2209 at 2230.949 kb on + strand, within EX28DRAFT_2209 at 2231.038 kb on - strand, within EX28DRAFT_2209 at 2231.047 kb on + strand, within EX28DRAFT_2209 at 2231.047 kb on + strand, within EX28DRAFT_2209 at 2231.047 kb on + strand, within EX28DRAFT_2209 at 2231.047 kb on + strand, within EX28DRAFT_2209 at 2231.048 kb on - strand, within EX28DRAFT_2209 at 2231.221 kb on + strand, within EX28DRAFT_2209 at 2231.374 kb on + strand, within EX28DRAFT_2209 at 2231.375 kb on - strand, within EX28DRAFT_2209 at 2231.515 kb on + strand, within EX28DRAFT_2209 at 2231.686 kb on - strand, within EX28DRAFT_2209 at 2231.703 kb on + strand at 2231.704 kb on - strand at 2231.704 kb on - strand at 2231.704 kb on - strand at 2231.744 kb on + strand at 2231.744 kb on + strand at 2231.744 kb on + strand at 2231.744 kb on + strand at 2231.748 kb on + strand at 2231.749 kb on - strand at 2231.751 kb on + strand at 2231.776 kb on + strand at 2231.776 kb on + strand at 2231.777 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction MS_media with m-arsenite 1 mM remove 2,229,481 + EX28DRAFT_2205 0.88 +0.7 2,229,492 + +0.3 2,229,778 - -1.0 2,229,796 + +0.4 2,229,853 + EX28DRAFT_2207 0.16 +1.3 2,229,853 + EX28DRAFT_2207 0.16 -1.8 2,229,853 + EX28DRAFT_2207 0.16 +1.6 2,229,854 - EX28DRAFT_2207 0.16 +0.2 2,229,883 - EX28DRAFT_2207 0.22 +0.0 2,229,883 - EX28DRAFT_2207 0.22 -0.2 2,229,947 + EX28DRAFT_2207 0.35 +1.0 2,230,220 - +1.1 2,230,261 + +0.7 2,230,261 + +0.4 2,230,261 + +1.1 2,230,261 + +1.1 2,230,261 + +0.5 2,230,261 + +0.6 2,230,261 + -0.3 2,230,261 + +0.6 2,230,262 - -5.0 2,230,262 - +0.6 2,230,262 - +0.3 2,230,262 - -0.2 2,230,266 + -0.3 2,230,266 + +0.5 2,230,267 - -0.2 2,230,267 - +0.3 2,230,291 + -0.2 2,230,481 + EX28DRAFT_2208 0.42 +1.1 2,230,481 + EX28DRAFT_2208 0.42 +0.4 2,230,697 - EX28DRAFT_2208 0.84 -0.3 2,230,697 - EX28DRAFT_2208 0.84 -0.1 2,230,735 + +0.7 2,230,777 + +1.4 2,230,778 - -0.0 2,230,778 - +0.7 2,230,832 - +1.0 2,230,834 + -0.2 2,230,949 + EX28DRAFT_2209 0.15 +0.7 2,230,949 + EX28DRAFT_2209 0.15 -2.9 2,231,038 - EX28DRAFT_2209 0.24 +0.2 2,231,047 + EX28DRAFT_2209 0.25 +0.3 2,231,047 + EX28DRAFT_2209 0.25 +1.9 2,231,047 + EX28DRAFT_2209 0.25 +0.3 2,231,047 + EX28DRAFT_2209 0.25 +0.9 2,231,048 - EX28DRAFT_2209 0.25 +0.1 2,231,221 + EX28DRAFT_2209 0.42 +0.5 2,231,374 + EX28DRAFT_2209 0.58 +1.0 2,231,375 - EX28DRAFT_2209 0.58 +0.6 2,231,515 + EX28DRAFT_2209 0.72 +1.4 2,231,686 - EX28DRAFT_2209 0.89 +1.2 2,231,703 + +0.6 2,231,704 - +0.0 2,231,704 - +0.5 2,231,704 - +0.2 2,231,744 + +1.3 2,231,744 + +0.5 2,231,744 + -3.0 2,231,744 + +0.5 2,231,748 + -0.8 2,231,749 - +0.9 2,231,751 + -0.3 2,231,776 + -4.4 2,231,776 + +0.4 2,231,777 - +0.1
Or see this region's nucleotide sequence