Experiment: MS_media with m-arsenite 1 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt EX28DRAFT_2203 and EX28DRAFT_2204 are separated by 105 nucleotides EX28DRAFT_2204 and EX28DRAFT_2205 are separated by 64 nucleotides EX28DRAFT_2205 and EX28DRAFT_2206 are separated by 1 nucleotides EX28DRAFT_2206 and EX28DRAFT_2207 overlap by 8 nucleotides EX28DRAFT_2207 and EX28DRAFT_2208 are separated by 3 nucleotides
EX28DRAFT_2203: EX28DRAFT_2203 - Predicted integral membrane protein, at 2,227,244 to 2,228,206
_2203
EX28DRAFT_2204: EX28DRAFT_2204 - Integral membrane protein, interacts with FtsH, at 2,228,312 to 2,229,019
_2204
EX28DRAFT_2205: EX28DRAFT_2205 - Molybdopterin converting factor, large subunit, at 2,229,084 to 2,229,536
_2205
EX28DRAFT_2206: EX28DRAFT_2206 - molybdopterin converting factor, subunit 1, non-archaeal, at 2,229,538 to 2,229,783
_2206
EX28DRAFT_2207: EX28DRAFT_2207 - molybdenum cofactor biosynthesis protein MoaC, at 2,229,776 to 2,230,261
_2207
EX28DRAFT_2208: EX28DRAFT_2208 - molybdenum cofactor biosynthesis protein B, proteobacterial, at 2,230,265 to 2,230,777
_2208
Position (kb)
2229
2230 Strain fitness (log2 ratio)
-5
-4
-3
-2
-1
0
1 at 2228.105 kb on + strand, within EX28DRAFT_2203 at 2228.105 kb on + strand, within EX28DRAFT_2203 at 2228.105 kb on + strand, within EX28DRAFT_2203 at 2228.106 kb on - strand, within EX28DRAFT_2203 at 2228.108 kb on + strand, within EX28DRAFT_2203 at 2228.108 kb on + strand, within EX28DRAFT_2203 at 2228.108 kb on + strand, within EX28DRAFT_2203 at 2228.108 kb on + strand, within EX28DRAFT_2203 at 2228.109 kb on - strand, within EX28DRAFT_2203 at 2228.142 kb on - strand at 2228.205 kb on - strand at 2228.397 kb on + strand, within EX28DRAFT_2204 at 2228.467 kb on - strand, within EX28DRAFT_2204 at 2228.467 kb on - strand, within EX28DRAFT_2204 at 2228.503 kb on - strand, within EX28DRAFT_2204 at 2228.598 kb on - strand, within EX28DRAFT_2204 at 2228.632 kb on - strand, within EX28DRAFT_2204 at 2228.691 kb on + strand, within EX28DRAFT_2204 at 2228.697 kb on + strand, within EX28DRAFT_2204 at 2228.697 kb on + strand, within EX28DRAFT_2204 at 2228.698 kb on - strand, within EX28DRAFT_2204 at 2228.698 kb on - strand, within EX28DRAFT_2204 at 2228.742 kb on + strand, within EX28DRAFT_2204 at 2228.749 kb on + strand, within EX28DRAFT_2204 at 2228.750 kb on - strand, within EX28DRAFT_2204 at 2228.750 kb on - strand, within EX28DRAFT_2204 at 2228.896 kb on - strand, within EX28DRAFT_2204 at 2228.956 kb on + strand at 2228.956 kb on + strand at 2228.957 kb on - strand at 2228.957 kb on - strand at 2228.958 kb on + strand at 2228.958 kb on + strand at 2228.958 kb on + strand at 2228.959 kb on - strand at 2228.959 kb on - strand at 2228.987 kb on + strand at 2228.990 kb on + strand at 2228.991 kb on - strand at 2229.041 kb on - strand at 2229.041 kb on - strand at 2229.041 kb on - strand at 2229.041 kb on - strand at 2229.044 kb on + strand at 2229.044 kb on + strand at 2229.057 kb on + strand at 2229.188 kb on - strand, within EX28DRAFT_2205 at 2229.195 kb on - strand, within EX28DRAFT_2205 at 2229.481 kb on + strand, within EX28DRAFT_2205 at 2229.492 kb on + strand at 2229.778 kb on - strand at 2229.796 kb on + strand at 2229.853 kb on + strand, within EX28DRAFT_2207 at 2229.853 kb on + strand, within EX28DRAFT_2207 at 2229.853 kb on + strand, within EX28DRAFT_2207 at 2229.854 kb on - strand, within EX28DRAFT_2207 at 2229.883 kb on - strand, within EX28DRAFT_2207 at 2229.883 kb on - strand, within EX28DRAFT_2207 at 2229.947 kb on + strand, within EX28DRAFT_2207 at 2230.220 kb on - strand at 2230.261 kb on + strand at 2230.261 kb on + strand at 2230.261 kb on + strand at 2230.261 kb on + strand at 2230.261 kb on + strand at 2230.261 kb on + strand at 2230.261 kb on + strand at 2230.261 kb on + strand at 2230.262 kb on - strand at 2230.262 kb on - strand at 2230.262 kb on - strand at 2230.262 kb on - strand at 2230.266 kb on + strand at 2230.266 kb on + strand at 2230.267 kb on - strand at 2230.267 kb on - strand at 2230.291 kb on + strand at 2230.481 kb on + strand, within EX28DRAFT_2208 at 2230.481 kb on + strand, within EX28DRAFT_2208
Per-strain Table
Position Strand Gene LocusTag Fraction MS_media with m-arsenite 1 mM remove 2,228,105 + EX28DRAFT_2203 0.89 +1.2 2,228,105 + EX28DRAFT_2203 0.89 +0.3 2,228,105 + EX28DRAFT_2203 0.89 +0.1 2,228,106 - EX28DRAFT_2203 0.90 +0.3 2,228,108 + EX28DRAFT_2203 0.90 +0.1 2,228,108 + EX28DRAFT_2203 0.90 +0.3 2,228,108 + EX28DRAFT_2203 0.90 +0.8 2,228,108 + EX28DRAFT_2203 0.90 -0.3 2,228,109 - EX28DRAFT_2203 0.90 -2.6 2,228,142 - +0.6 2,228,205 - -2.1 2,228,397 + EX28DRAFT_2204 0.12 -1.3 2,228,467 - EX28DRAFT_2204 0.22 +0.2 2,228,467 - EX28DRAFT_2204 0.22 -0.1 2,228,503 - EX28DRAFT_2204 0.27 -1.1 2,228,598 - EX28DRAFT_2204 0.40 +0.4 2,228,632 - EX28DRAFT_2204 0.45 +1.0 2,228,691 + EX28DRAFT_2204 0.54 +0.4 2,228,697 + EX28DRAFT_2204 0.54 +0.5 2,228,697 + EX28DRAFT_2204 0.54 +0.1 2,228,698 - EX28DRAFT_2204 0.55 +0.7 2,228,698 - EX28DRAFT_2204 0.55 +0.5 2,228,742 + EX28DRAFT_2204 0.61 -2.7 2,228,749 + EX28DRAFT_2204 0.62 -0.8 2,228,750 - EX28DRAFT_2204 0.62 -2.1 2,228,750 - EX28DRAFT_2204 0.62 -0.9 2,228,896 - EX28DRAFT_2204 0.82 +1.2 2,228,956 + -1.4 2,228,956 + -1.8 2,228,957 - +0.1 2,228,957 - -1.3 2,228,958 + +0.8 2,228,958 + -0.1 2,228,958 + +0.5 2,228,959 - -0.4 2,228,959 - -0.4 2,228,987 + -0.6 2,228,990 + -2.9 2,228,991 - -2.2 2,229,041 - -0.8 2,229,041 - -0.2 2,229,041 - +1.1 2,229,041 - +1.0 2,229,044 + -3.5 2,229,044 + +0.2 2,229,057 + +0.6 2,229,188 - EX28DRAFT_2205 0.23 +0.9 2,229,195 - EX28DRAFT_2205 0.25 +1.5 2,229,481 + EX28DRAFT_2205 0.88 +0.7 2,229,492 + +0.3 2,229,778 - -1.0 2,229,796 + +0.4 2,229,853 + EX28DRAFT_2207 0.16 +1.3 2,229,853 + EX28DRAFT_2207 0.16 -1.8 2,229,853 + EX28DRAFT_2207 0.16 +1.6 2,229,854 - EX28DRAFT_2207 0.16 +0.2 2,229,883 - EX28DRAFT_2207 0.22 +0.0 2,229,883 - EX28DRAFT_2207 0.22 -0.2 2,229,947 + EX28DRAFT_2207 0.35 +1.0 2,230,220 - +1.1 2,230,261 + +0.7 2,230,261 + +0.4 2,230,261 + +1.1 2,230,261 + +1.1 2,230,261 + +0.5 2,230,261 + +0.6 2,230,261 + -0.3 2,230,261 + +0.6 2,230,262 - -5.0 2,230,262 - +0.6 2,230,262 - +0.3 2,230,262 - -0.2 2,230,266 + -0.3 2,230,266 + +0.5 2,230,267 - -0.2 2,230,267 - +0.3 2,230,291 + -0.2 2,230,481 + EX28DRAFT_2208 0.42 +1.1 2,230,481 + EX28DRAFT_2208 0.42 +0.4
Or see this region's nucleotide sequence