Experiment: MS_media with m-arsenite 1 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt EX28DRAFT_2151 and EX28DRAFT_2152 are separated by 226 nucleotides EX28DRAFT_2152 and EX28DRAFT_2153 are separated by 86 nucleotides EX28DRAFT_2153 and EX28DRAFT_2154 are separated by 12 nucleotides
EX28DRAFT_2151: EX28DRAFT_2151 - Beta-glucosidase/6-phospho-beta-glucosidase/beta-galactosidase, at 2,175,831 to 2,177,207
_2151
EX28DRAFT_2152: EX28DRAFT_2152 - Bacterial regulatory proteins, luxR family, at 2,177,434 to 2,178,033
_2152
EX28DRAFT_2153: EX28DRAFT_2153 - PapG chaperone-binding domain, at 2,178,120 to 2,178,902
_2153
EX28DRAFT_2154: EX28DRAFT_2154 - P pilus assembly protein, pilin FimA, at 2,178,915 to 2,179,442
_2154
Position (kb)
2177
2178
2179 Strain fitness (log2 ratio)
-4
-3
-2
-1
0
1
2 at 2176.492 kb on + strand, within EX28DRAFT_2151 at 2176.598 kb on - strand, within EX28DRAFT_2151 at 2176.628 kb on + strand, within EX28DRAFT_2151 at 2176.628 kb on + strand, within EX28DRAFT_2151 at 2176.629 kb on - strand, within EX28DRAFT_2151 at 2176.676 kb on + strand, within EX28DRAFT_2151 at 2176.676 kb on + strand, within EX28DRAFT_2151 at 2176.677 kb on - strand, within EX28DRAFT_2151 at 2176.677 kb on - strand, within EX28DRAFT_2151 at 2176.678 kb on + strand, within EX28DRAFT_2151 at 2176.742 kb on - strand, within EX28DRAFT_2151 at 2176.829 kb on - strand, within EX28DRAFT_2151 at 2177.050 kb on + strand, within EX28DRAFT_2151 at 2177.051 kb on - strand, within EX28DRAFT_2151 at 2177.108 kb on - strand at 2177.262 kb on - strand at 2177.324 kb on + strand at 2177.386 kb on + strand at 2177.411 kb on + strand at 2177.493 kb on - strand at 2177.589 kb on - strand, within EX28DRAFT_2152 at 2177.807 kb on - strand, within EX28DRAFT_2152 at 2178.047 kb on - strand at 2178.094 kb on + strand at 2178.122 kb on - strand at 2178.124 kb on + strand at 2178.262 kb on - strand, within EX28DRAFT_2153 at 2178.287 kb on - strand, within EX28DRAFT_2153 at 2178.292 kb on + strand, within EX28DRAFT_2153 at 2178.292 kb on + strand, within EX28DRAFT_2153 at 2178.293 kb on - strand, within EX28DRAFT_2153 at 2178.297 kb on - strand, within EX28DRAFT_2153 at 2178.297 kb on - strand, within EX28DRAFT_2153 at 2178.345 kb on - strand, within EX28DRAFT_2153 at 2178.399 kb on - strand, within EX28DRAFT_2153 at 2178.435 kb on - strand, within EX28DRAFT_2153 at 2178.609 kb on - strand, within EX28DRAFT_2153 at 2178.611 kb on - strand, within EX28DRAFT_2153 at 2178.613 kb on - strand, within EX28DRAFT_2153 at 2178.786 kb on - strand, within EX28DRAFT_2153 at 2178.961 kb on - strand at 2179.007 kb on - strand, within EX28DRAFT_2154 at 2179.007 kb on - strand, within EX28DRAFT_2154
Per-strain Table
Position Strand Gene LocusTag Fraction MS_media with m-arsenite 1 mM remove 2,176,492 + EX28DRAFT_2151 0.48 -0.1 2,176,598 - EX28DRAFT_2151 0.56 -0.7 2,176,628 + EX28DRAFT_2151 0.58 -0.5 2,176,628 + EX28DRAFT_2151 0.58 +1.0 2,176,629 - EX28DRAFT_2151 0.58 +0.9 2,176,676 + EX28DRAFT_2151 0.61 +0.0 2,176,676 + EX28DRAFT_2151 0.61 -1.9 2,176,677 - EX28DRAFT_2151 0.61 +0.4 2,176,677 - EX28DRAFT_2151 0.61 +0.5 2,176,678 + EX28DRAFT_2151 0.62 -0.0 2,176,742 - EX28DRAFT_2151 0.66 -1.2 2,176,829 - EX28DRAFT_2151 0.72 +0.0 2,177,050 + EX28DRAFT_2151 0.89 -0.1 2,177,051 - EX28DRAFT_2151 0.89 -1.1 2,177,108 - -0.4 2,177,262 - -2.4 2,177,324 + -1.5 2,177,386 + +0.5 2,177,411 + -2.8 2,177,493 - -0.2 2,177,589 - EX28DRAFT_2152 0.26 -1.2 2,177,807 - EX28DRAFT_2152 0.62 -0.6 2,178,047 - +1.2 2,178,094 + -4.3 2,178,122 - -0.1 2,178,124 + -0.0 2,178,262 - EX28DRAFT_2153 0.18 +0.9 2,178,287 - EX28DRAFT_2153 0.21 -1.4 2,178,292 + EX28DRAFT_2153 0.22 -0.2 2,178,292 + EX28DRAFT_2153 0.22 -0.3 2,178,293 - EX28DRAFT_2153 0.22 -0.4 2,178,297 - EX28DRAFT_2153 0.23 -0.5 2,178,297 - EX28DRAFT_2153 0.23 -1.0 2,178,345 - EX28DRAFT_2153 0.29 +0.3 2,178,399 - EX28DRAFT_2153 0.36 -0.3 2,178,435 - EX28DRAFT_2153 0.40 +0.2 2,178,609 - EX28DRAFT_2153 0.62 +0.9 2,178,611 - EX28DRAFT_2153 0.63 -0.0 2,178,613 - EX28DRAFT_2153 0.63 +0.2 2,178,786 - EX28DRAFT_2153 0.85 -0.4 2,178,961 - +2.3 2,179,007 - EX28DRAFT_2154 0.17 +0.4 2,179,007 - EX28DRAFT_2154 0.17 -0.2
Or see this region's nucleotide sequence