Strain Fitness in Enterobacter asburiae PDN3 around EX28DRAFT_2007

Experiment: MS_media with m-arsenite 1 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntEX28DRAFT_2006 and EX28DRAFT_2007 are separated by 606 nucleotidesEX28DRAFT_2007 and EX28DRAFT_2008 are separated by 184 nucleotides EX28DRAFT_2006: EX28DRAFT_2006 - asparaginyl-tRNA synthetase (EC 6.1.1.22), at 2,011,422 to 2,012,822 _2006 EX28DRAFT_2007: EX28DRAFT_2007 - Outer membrane protein (porin), at 2,013,429 to 2,014,535 _2007 EX28DRAFT_2008: EX28DRAFT_2008 - Aspartate/tyrosine/aromatic aminotransferase, at 2,014,720 to 2,015,910 _2008 Position (kb) 2013 2014 2015Strain fitness (log2 ratio) -5 -4 -3 -2 -1 0 1 2at 2012.862 kb on - strandat 2012.873 kb on + strandat 2013.000 kb on + strandat 2013.001 kb on - strandat 2013.003 kb on + strandat 2013.003 kb on + strandat 2013.004 kb on - strandat 2013.071 kb on - strandat 2013.146 kb on - strandat 2013.148 kb on - strandat 2013.322 kb on + strandat 2013.323 kb on - strandat 2013.326 kb on + strandat 2013.327 kb on - strandat 2013.423 kb on + strandat 2013.423 kb on + strandat 2013.423 kb on + strandat 2013.428 kb on - strandat 2013.428 kb on - strandat 2013.504 kb on + strandat 2013.505 kb on - strandat 2013.534 kb on + strandat 2013.534 kb on + strandat 2013.534 kb on + strandat 2013.535 kb on - strandat 2013.535 kb on - strandat 2013.535 kb on - strandat 2013.599 kb on + strand, within EX28DRAFT_2007at 2013.603 kb on + strand, within EX28DRAFT_2007at 2013.672 kb on + strand, within EX28DRAFT_2007at 2013.714 kb on - strand, within EX28DRAFT_2007at 2013.783 kb on + strand, within EX28DRAFT_2007at 2013.783 kb on + strand, within EX28DRAFT_2007at 2013.783 kb on + strand, within EX28DRAFT_2007at 2013.783 kb on + strand, within EX28DRAFT_2007at 2013.783 kb on + strand, within EX28DRAFT_2007at 2013.810 kb on + strand, within EX28DRAFT_2007at 2013.858 kb on + strand, within EX28DRAFT_2007at 2013.903 kb on + strand, within EX28DRAFT_2007at 2013.958 kb on - strand, within EX28DRAFT_2007at 2013.986 kb on + strand, within EX28DRAFT_2007at 2013.986 kb on + strand, within EX28DRAFT_2007at 2014.009 kb on + strand, within EX28DRAFT_2007at 2014.010 kb on - strand, within EX28DRAFT_2007at 2014.010 kb on - strand, within EX28DRAFT_2007at 2014.062 kb on + strand, within EX28DRAFT_2007at 2014.063 kb on - strand, within EX28DRAFT_2007at 2014.063 kb on - strand, within EX28DRAFT_2007at 2014.144 kb on - strand, within EX28DRAFT_2007at 2014.161 kb on + strand, within EX28DRAFT_2007at 2014.161 kb on + strand, within EX28DRAFT_2007at 2014.161 kb on + strand, within EX28DRAFT_2007at 2014.177 kb on - strand, within EX28DRAFT_2007at 2014.302 kb on + strand, within EX28DRAFT_2007at 2014.320 kb on - strand, within EX28DRAFT_2007at 2014.371 kb on - strand, within EX28DRAFT_2007at 2014.395 kb on + strand, within EX28DRAFT_2007at 2014.395 kb on + strand, within EX28DRAFT_2007at 2014.396 kb on - strand, within EX28DRAFT_2007at 2014.396 kb on - strand, within EX28DRAFT_2007at 2014.396 kb on - strand, within EX28DRAFT_2007at 2014.399 kb on - strand, within EX28DRAFT_2007at 2014.434 kb on + strandat 2014.435 kb on - strandat 2014.465 kb on - strandat 2014.540 kb on + strandat 2014.541 kb on - strandat 2014.541 kb on - strandat 2014.553 kb on + strandat 2014.553 kb on + strandat 2014.554 kb on - strandat 2014.554 kb on - strandat 2014.554 kb on - strandat 2014.555 kb on + strandat 2014.555 kb on + strandat 2014.555 kb on + strandat 2014.555 kb on + strandat 2014.555 kb on + strandat 2014.555 kb on + strandat 2014.555 kb on + strandat 2014.556 kb on - strandat 2014.556 kb on - strandat 2014.556 kb on - strandat 2014.561 kb on + strandat 2014.561 kb on + strandat 2014.590 kb on + strandat 2014.661 kb on + strandat 2014.823 kb on + strandat 2014.824 kb on - strandat 2014.824 kb on - strandat 2014.825 kb on + strandat 2014.825 kb on + strandat 2014.826 kb on - strandat 2014.827 kb on + strandat 2014.827 kb on + strandat 2014.827 kb on + strandat 2014.827 kb on + strandat 2014.828 kb on - strandat 2014.882 kb on + strand, within EX28DRAFT_2008at 2015.167 kb on + strand, within EX28DRAFT_2008at 2015.168 kb on - strand, within EX28DRAFT_2008at 2015.470 kb on + strand, within EX28DRAFT_2008at 2015.471 kb on - strand, within EX28DRAFT_2008

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Per-strain Table

Position Strand Gene LocusTag Fraction MS_media with m-arsenite 1 mM
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2,012,862 - +0.1
2,012,873 + -1.5
2,013,000 + +0.9
2,013,001 - +1.0
2,013,003 + -1.3
2,013,003 + -0.9
2,013,004 - +0.2
2,013,071 - +0.7
2,013,146 - +0.1
2,013,148 - -0.1
2,013,322 + -0.1
2,013,323 - -0.3
2,013,326 + +0.2
2,013,327 - +0.1
2,013,423 + -2.4
2,013,423 + -1.9
2,013,423 + -0.1
2,013,428 - +0.2
2,013,428 - +0.4
2,013,504 + -0.5
2,013,505 - -0.5
2,013,534 + +1.1
2,013,534 + -0.9
2,013,534 + +0.9
2,013,535 - -0.4
2,013,535 - +0.0
2,013,535 - +0.4
2,013,599 + EX28DRAFT_2007 0.15 +0.3
2,013,603 + EX28DRAFT_2007 0.16 -4.1
2,013,672 + EX28DRAFT_2007 0.22 -0.9
2,013,714 - EX28DRAFT_2007 0.26 -2.6
2,013,783 + EX28DRAFT_2007 0.32 -4.6
2,013,783 + EX28DRAFT_2007 0.32 -1.4
2,013,783 + EX28DRAFT_2007 0.32 +0.2
2,013,783 + EX28DRAFT_2007 0.32 -0.6
2,013,783 + EX28DRAFT_2007 0.32 -0.4
2,013,810 + EX28DRAFT_2007 0.34 +1.0
2,013,858 + EX28DRAFT_2007 0.39 -0.1
2,013,903 + EX28DRAFT_2007 0.43 +0.5
2,013,958 - EX28DRAFT_2007 0.48 +1.2
2,013,986 + EX28DRAFT_2007 0.50 -1.5
2,013,986 + EX28DRAFT_2007 0.50 -2.2
2,014,009 + EX28DRAFT_2007 0.52 -0.9
2,014,010 - EX28DRAFT_2007 0.52 -1.0
2,014,010 - EX28DRAFT_2007 0.52 +0.6
2,014,062 + EX28DRAFT_2007 0.57 +0.0
2,014,063 - EX28DRAFT_2007 0.57 -0.8
2,014,063 - EX28DRAFT_2007 0.57 -1.7
2,014,144 - EX28DRAFT_2007 0.65 -2.4
2,014,161 + EX28DRAFT_2007 0.66 -2.8
2,014,161 + EX28DRAFT_2007 0.66 +0.1
2,014,161 + EX28DRAFT_2007 0.66 +1.0
2,014,177 - EX28DRAFT_2007 0.68 -3.2
2,014,302 + EX28DRAFT_2007 0.79 -0.5
2,014,320 - EX28DRAFT_2007 0.80 +0.1
2,014,371 - EX28DRAFT_2007 0.85 -1.8
2,014,395 + EX28DRAFT_2007 0.87 -1.1
2,014,395 + EX28DRAFT_2007 0.87 -4.2
2,014,396 - EX28DRAFT_2007 0.87 -0.3
2,014,396 - EX28DRAFT_2007 0.87 +0.4
2,014,396 - EX28DRAFT_2007 0.87 +0.5
2,014,399 - EX28DRAFT_2007 0.88 -0.8
2,014,434 + -0.4
2,014,435 - -4.2
2,014,465 - -0.4
2,014,540 + -0.2
2,014,541 - -0.5
2,014,541 - +0.2
2,014,553 + -0.1
2,014,553 + -0.8
2,014,554 - -0.4
2,014,554 - +0.7
2,014,554 - +0.7
2,014,555 + +0.1
2,014,555 + -0.3
2,014,555 + -0.8
2,014,555 + -1.1
2,014,555 + -0.4
2,014,555 + -0.3
2,014,555 + -3.2
2,014,556 - +0.5
2,014,556 - +2.2
2,014,556 - -0.7
2,014,561 + +0.3
2,014,561 + -1.2
2,014,590 + +2.5
2,014,661 + -0.5
2,014,823 + -1.0
2,014,824 - -0.9
2,014,824 - +0.7
2,014,825 + -1.9
2,014,825 + -1.0
2,014,826 - -2.8
2,014,827 + -2.8
2,014,827 + -5.3
2,014,827 + -1.3
2,014,827 + -3.9
2,014,828 - -2.9
2,014,882 + EX28DRAFT_2008 0.14 -1.8
2,015,167 + EX28DRAFT_2008 0.38 -1.0
2,015,168 - EX28DRAFT_2008 0.38 -0.3
2,015,470 + EX28DRAFT_2008 0.63 -2.0
2,015,471 - EX28DRAFT_2008 0.63 -3.9

Or see this region's nucleotide sequence