Experiment: MS_media with m-arsenite 1 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt EX28DRAFT_1974 and EX28DRAFT_1975 are separated by 10 nucleotides EX28DRAFT_1975 and EX28DRAFT_1976 are separated by 173 nucleotides EX28DRAFT_1976 and EX28DRAFT_1977 are separated by 60 nucleotides EX28DRAFT_1977 and EX28DRAFT_1978 are separated by 35 nucleotides
EX28DRAFT_1974: EX28DRAFT_1974 - AraC-type DNA-binding domain-containing proteins, at 1,976,168 to 1,976,956
_1974
EX28DRAFT_1975: EX28DRAFT_1975 - Raf kinase inhibitor-like protein, YbhB/YbcL family, at 1,976,967 to 1,977,524
_1975
EX28DRAFT_1976: EX28DRAFT_1976 - Predicted SAM-dependent methyltransferases, at 1,977,698 to 1,978,888
_1976
EX28DRAFT_1977: EX28DRAFT_1977 - hemimethylated DNA binding domain, at 1,978,949 to 1,979,266
_1977
EX28DRAFT_1978: EX28DRAFT_1978 - Predicted CoA-binding protein, at 1,979,302 to 1,979,715
_1978
Position (kb)
1977
1978
1979 Strain fitness (log2 ratio)
-5
-4
-3
-2
-1
0
1
2 at 1976.780 kb on - strand, within EX28DRAFT_1974 at 1976.813 kb on - strand, within EX28DRAFT_1974 at 1976.848 kb on + strand, within EX28DRAFT_1974 at 1976.849 kb on - strand, within EX28DRAFT_1974 at 1976.932 kb on + strand at 1976.932 kb on + strand at 1976.932 kb on + strand at 1976.933 kb on - strand at 1976.945 kb on + strand at 1976.945 kb on + strand at 1976.968 kb on + strand at 1976.968 kb on + strand at 1976.969 kb on - strand at 1976.969 kb on - strand at 1976.977 kb on + strand at 1977.069 kb on - strand, within EX28DRAFT_1975 at 1977.190 kb on - strand, within EX28DRAFT_1975 at 1977.301 kb on + strand, within EX28DRAFT_1975 at 1977.302 kb on - strand, within EX28DRAFT_1975 at 1977.303 kb on + strand, within EX28DRAFT_1975 at 1977.304 kb on - strand, within EX28DRAFT_1975 at 1977.304 kb on - strand, within EX28DRAFT_1975 at 1977.432 kb on - strand, within EX28DRAFT_1975 at 1977.507 kb on + strand at 1977.574 kb on + strand at 1977.575 kb on - strand at 1977.657 kb on - strand at 1977.657 kb on - strand at 1977.705 kb on + strand at 1978.072 kb on - strand, within EX28DRAFT_1976 at 1978.310 kb on + strand, within EX28DRAFT_1976 at 1978.311 kb on - strand, within EX28DRAFT_1976 at 1978.349 kb on + strand, within EX28DRAFT_1976 at 1978.386 kb on - strand, within EX28DRAFT_1976 at 1978.435 kb on - strand, within EX28DRAFT_1976 at 1978.435 kb on - strand, within EX28DRAFT_1976 at 1978.552 kb on + strand, within EX28DRAFT_1976 at 1978.552 kb on + strand, within EX28DRAFT_1976 at 1978.552 kb on + strand, within EX28DRAFT_1976 at 1978.552 kb on + strand, within EX28DRAFT_1976 at 1978.552 kb on + strand, within EX28DRAFT_1976 at 1978.553 kb on - strand, within EX28DRAFT_1976 at 1978.556 kb on + strand, within EX28DRAFT_1976 at 1978.557 kb on - strand, within EX28DRAFT_1976 at 1978.652 kb on - strand, within EX28DRAFT_1976 at 1978.652 kb on - strand, within EX28DRAFT_1976 at 1978.652 kb on - strand, within EX28DRAFT_1976 at 1978.657 kb on + strand, within EX28DRAFT_1976 at 1978.740 kb on + strand, within EX28DRAFT_1976 at 1978.740 kb on + strand, within EX28DRAFT_1976 at 1978.770 kb on + strand at 1978.770 kb on + strand at 1978.770 kb on + strand at 1978.770 kb on + strand at 1978.771 kb on - strand at 1978.796 kb on - strand at 1978.797 kb on + strand at 1978.797 kb on + strand at 1978.797 kb on + strand at 1978.886 kb on + strand at 1978.886 kb on + strand at 1978.886 kb on + strand at 1978.903 kb on + strand at 1978.916 kb on + strand at 1978.916 kb on + strand at 1978.917 kb on - strand at 1978.923 kb on + strand at 1978.923 kb on + strand at 1978.923 kb on + strand at 1978.923 kb on + strand at 1978.924 kb on - strand at 1978.928 kb on - strand at 1979.147 kb on + strand, within EX28DRAFT_1977 at 1979.148 kb on - strand, within EX28DRAFT_1977 at 1979.265 kb on - strand at 1979.265 kb on - strand at 1979.534 kb on + strand, within EX28DRAFT_1978 at 1979.612 kb on + strand, within EX28DRAFT_1978 at 1979.700 kb on + strand at 1979.778 kb on + strand at 1979.807 kb on + strand at 1979.807 kb on + strand at 1979.808 kb on - strand at 1979.808 kb on - strand at 1979.808 kb on - strand at 1979.808 kb on - strand at 1979.813 kb on + strand at 1979.813 kb on + strand at 1979.814 kb on - strand at 1979.814 kb on - strand at 1979.814 kb on - strand at 1979.814 kb on - strand at 1979.815 kb on + strand at 1979.816 kb on - strand at 1979.816 kb on - strand at 1979.816 kb on - strand at 1979.816 kb on - strand at 1979.816 kb on - strand at 1979.816 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction MS_media with m-arsenite 1 mM remove 1,976,780 - EX28DRAFT_1974 0.78 +0.0 1,976,813 - EX28DRAFT_1974 0.82 -1.3 1,976,848 + EX28DRAFT_1974 0.86 -0.3 1,976,849 - EX28DRAFT_1974 0.86 -0.3 1,976,932 + +0.4 1,976,932 + -0.2 1,976,932 + +0.5 1,976,933 - -3.6 1,976,945 + -2.6 1,976,945 + -0.5 1,976,968 + -0.2 1,976,968 + -0.4 1,976,969 - -0.2 1,976,969 - +0.6 1,976,977 + -0.3 1,977,069 - EX28DRAFT_1975 0.18 -0.0 1,977,190 - EX28DRAFT_1975 0.40 +0.4 1,977,301 + EX28DRAFT_1975 0.60 -0.2 1,977,302 - EX28DRAFT_1975 0.60 +0.6 1,977,303 + EX28DRAFT_1975 0.60 -0.4 1,977,304 - EX28DRAFT_1975 0.60 +0.3 1,977,304 - EX28DRAFT_1975 0.60 +0.2 1,977,432 - EX28DRAFT_1975 0.83 -0.1 1,977,507 + +2.6 1,977,574 + +0.6 1,977,575 - -0.6 1,977,657 - +1.4 1,977,657 - +1.7 1,977,705 + +1.4 1,978,072 - EX28DRAFT_1976 0.31 +0.3 1,978,310 + EX28DRAFT_1976 0.51 +0.4 1,978,311 - EX28DRAFT_1976 0.51 +0.9 1,978,349 + EX28DRAFT_1976 0.55 -0.1 1,978,386 - EX28DRAFT_1976 0.58 -4.8 1,978,435 - EX28DRAFT_1976 0.62 +0.3 1,978,435 - EX28DRAFT_1976 0.62 -0.6 1,978,552 + EX28DRAFT_1976 0.72 -0.8 1,978,552 + EX28DRAFT_1976 0.72 +0.3 1,978,552 + EX28DRAFT_1976 0.72 +1.3 1,978,552 + EX28DRAFT_1976 0.72 -0.3 1,978,552 + EX28DRAFT_1976 0.72 -1.6 1,978,553 - EX28DRAFT_1976 0.72 -0.7 1,978,556 + EX28DRAFT_1976 0.72 +0.1 1,978,557 - EX28DRAFT_1976 0.72 +0.4 1,978,652 - EX28DRAFT_1976 0.80 -1.7 1,978,652 - EX28DRAFT_1976 0.80 +0.2 1,978,652 - EX28DRAFT_1976 0.80 +0.4 1,978,657 + EX28DRAFT_1976 0.81 -0.7 1,978,740 + EX28DRAFT_1976 0.87 -1.5 1,978,740 + EX28DRAFT_1976 0.87 -2.2 1,978,770 + -0.1 1,978,770 + +0.2 1,978,770 + +0.9 1,978,770 + -0.5 1,978,771 - +1.2 1,978,796 - -0.8 1,978,797 + +0.5 1,978,797 + -0.1 1,978,797 + -0.2 1,978,886 + -0.1 1,978,886 + +1.3 1,978,886 + +0.4 1,978,903 + +2.6 1,978,916 + -0.1 1,978,916 + -0.2 1,978,917 - -0.7 1,978,923 + +0.9 1,978,923 + -0.8 1,978,923 + +1.6 1,978,923 + +0.9 1,978,924 - +2.0 1,978,928 - -0.4 1,979,147 + EX28DRAFT_1977 0.62 +0.1 1,979,148 - EX28DRAFT_1977 0.63 -2.4 1,979,265 - -0.7 1,979,265 - -0.5 1,979,534 + EX28DRAFT_1978 0.56 -1.0 1,979,612 + EX28DRAFT_1978 0.75 +1.2 1,979,700 + +0.4 1,979,778 + -0.5 1,979,807 + -2.6 1,979,807 + -1.6 1,979,808 - -0.2 1,979,808 - +0.1 1,979,808 - -0.8 1,979,808 - -0.4 1,979,813 + -0.6 1,979,813 + -0.1 1,979,814 - +0.4 1,979,814 - +0.9 1,979,814 - -1.2 1,979,814 - +0.3 1,979,815 + -0.3 1,979,816 - -0.8 1,979,816 - -2.3 1,979,816 - +0.6 1,979,816 - +0.2 1,979,816 - -0.0 1,979,816 - -1.6
Or see this region's nucleotide sequence