Experiment: MS_media with m-arsenite 1 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt EX28DRAFT_1872 and EX28DRAFT_1873 are separated by 59 nucleotides EX28DRAFT_1873 and EX28DRAFT_1874 are separated by 150 nucleotides EX28DRAFT_1874 and EX28DRAFT_1875 are separated by 1 nucleotides
EX28DRAFT_1872: EX28DRAFT_1872 - Glycine/D-amino acid oxidases (deaminating), at 1,885,026 to 1,886,144
_1872
EX28DRAFT_1873: EX28DRAFT_1873 - Protein of unknown function (DUF2770), at 1,886,204 to 1,886,317
_1873
EX28DRAFT_1874: EX28DRAFT_1874 - Cytochrome B561, at 1,886,468 to 1,887,091
_1874
EX28DRAFT_1875: EX28DRAFT_1875 - Uncharacterized conserved protein, at 1,887,093 to 1,887,671
_1875
Position (kb)
1886
1887 Strain fitness (log2 ratio)
-4
-3
-2
-1
0
1
2 at 1885.207 kb on + strand, within EX28DRAFT_1872 at 1885.208 kb on - strand, within EX28DRAFT_1872 at 1885.208 kb on - strand, within EX28DRAFT_1872 at 1885.425 kb on + strand, within EX28DRAFT_1872 at 1885.426 kb on - strand, within EX28DRAFT_1872 at 1885.847 kb on + strand, within EX28DRAFT_1872 at 1885.946 kb on + strand, within EX28DRAFT_1872 at 1885.947 kb on - strand, within EX28DRAFT_1872 at 1885.950 kb on + strand, within EX28DRAFT_1872 at 1885.986 kb on - strand, within EX28DRAFT_1872 at 1886.043 kb on - strand at 1886.259 kb on - strand, within EX28DRAFT_1873 at 1886.261 kb on - strand, within EX28DRAFT_1873 at 1886.261 kb on - strand, within EX28DRAFT_1873 at 1886.373 kb on + strand at 1886.396 kb on - strand at 1886.437 kb on + strand at 1886.506 kb on + strand at 1886.562 kb on + strand, within EX28DRAFT_1874 at 1886.569 kb on - strand, within EX28DRAFT_1874 at 1886.584 kb on - strand, within EX28DRAFT_1874 at 1886.643 kb on - strand, within EX28DRAFT_1874 at 1886.645 kb on + strand, within EX28DRAFT_1874 at 1886.677 kb on - strand, within EX28DRAFT_1874 at 1886.680 kb on + strand, within EX28DRAFT_1874 at 1886.681 kb on - strand, within EX28DRAFT_1874 at 1886.681 kb on - strand, within EX28DRAFT_1874 at 1886.817 kb on - strand, within EX28DRAFT_1874 at 1886.854 kb on + strand, within EX28DRAFT_1874 at 1887.035 kb on - strand at 1887.048 kb on + strand at 1887.131 kb on - strand at 1887.131 kb on - strand at 1887.133 kb on + strand at 1887.133 kb on + strand at 1887.166 kb on - strand, within EX28DRAFT_1875 at 1887.243 kb on - strand, within EX28DRAFT_1875
Per-strain Table
Position Strand Gene LocusTag Fraction MS_media with m-arsenite 1 mM remove 1,885,207 + EX28DRAFT_1872 0.16 -3.3 1,885,208 - EX28DRAFT_1872 0.16 +0.0 1,885,208 - EX28DRAFT_1872 0.16 -1.3 1,885,425 + EX28DRAFT_1872 0.36 -1.3 1,885,426 - EX28DRAFT_1872 0.36 +1.0 1,885,847 + EX28DRAFT_1872 0.73 -1.2 1,885,946 + EX28DRAFT_1872 0.82 +0.6 1,885,947 - EX28DRAFT_1872 0.82 -0.5 1,885,950 + EX28DRAFT_1872 0.83 +0.1 1,885,986 - EX28DRAFT_1872 0.86 -0.1 1,886,043 - -0.4 1,886,259 - EX28DRAFT_1873 0.48 -0.6 1,886,261 - EX28DRAFT_1873 0.50 -2.5 1,886,261 - EX28DRAFT_1873 0.50 -2.5 1,886,373 + -0.1 1,886,396 - -0.7 1,886,437 + -0.6 1,886,506 + +1.5 1,886,562 + EX28DRAFT_1874 0.15 -1.4 1,886,569 - EX28DRAFT_1874 0.16 +0.2 1,886,584 - EX28DRAFT_1874 0.19 +0.1 1,886,643 - EX28DRAFT_1874 0.28 -0.7 1,886,645 + EX28DRAFT_1874 0.28 +0.7 1,886,677 - EX28DRAFT_1874 0.33 -0.2 1,886,680 + EX28DRAFT_1874 0.34 -1.7 1,886,681 - EX28DRAFT_1874 0.34 -3.6 1,886,681 - EX28DRAFT_1874 0.34 -0.3 1,886,817 - EX28DRAFT_1874 0.56 -0.4 1,886,854 + EX28DRAFT_1874 0.62 +0.6 1,887,035 - +0.8 1,887,048 + -0.1 1,887,131 - +0.2 1,887,131 - -0.9 1,887,133 + -4.5 1,887,133 + +1.8 1,887,166 - EX28DRAFT_1875 0.13 -1.0 1,887,243 - EX28DRAFT_1875 0.26 -2.4
Or see this region's nucleotide sequence