Strain Fitness in Enterobacter asburiae PDN3 around EX28DRAFT_1873

Experiment: MS_media with m-arsenite 1 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntEX28DRAFT_1872 and EX28DRAFT_1873 are separated by 59 nucleotidesEX28DRAFT_1873 and EX28DRAFT_1874 are separated by 150 nucleotidesEX28DRAFT_1874 and EX28DRAFT_1875 are separated by 1 nucleotides EX28DRAFT_1872: EX28DRAFT_1872 - Glycine/D-amino acid oxidases (deaminating), at 1,885,026 to 1,886,144 _1872 EX28DRAFT_1873: EX28DRAFT_1873 - Protein of unknown function (DUF2770), at 1,886,204 to 1,886,317 _1873 EX28DRAFT_1874: EX28DRAFT_1874 - Cytochrome B561, at 1,886,468 to 1,887,091 _1874 EX28DRAFT_1875: EX28DRAFT_1875 - Uncharacterized conserved protein, at 1,887,093 to 1,887,671 _1875 Position (kb) 1886 1887Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2at 1885.207 kb on + strand, within EX28DRAFT_1872at 1885.208 kb on - strand, within EX28DRAFT_1872at 1885.208 kb on - strand, within EX28DRAFT_1872at 1885.425 kb on + strand, within EX28DRAFT_1872at 1885.426 kb on - strand, within EX28DRAFT_1872at 1885.847 kb on + strand, within EX28DRAFT_1872at 1885.946 kb on + strand, within EX28DRAFT_1872at 1885.947 kb on - strand, within EX28DRAFT_1872at 1885.950 kb on + strand, within EX28DRAFT_1872at 1885.986 kb on - strand, within EX28DRAFT_1872at 1886.043 kb on - strandat 1886.259 kb on - strand, within EX28DRAFT_1873at 1886.261 kb on - strand, within EX28DRAFT_1873at 1886.261 kb on - strand, within EX28DRAFT_1873at 1886.373 kb on + strandat 1886.396 kb on - strandat 1886.437 kb on + strandat 1886.506 kb on + strandat 1886.562 kb on + strand, within EX28DRAFT_1874at 1886.569 kb on - strand, within EX28DRAFT_1874at 1886.584 kb on - strand, within EX28DRAFT_1874at 1886.643 kb on - strand, within EX28DRAFT_1874at 1886.645 kb on + strand, within EX28DRAFT_1874at 1886.677 kb on - strand, within EX28DRAFT_1874at 1886.680 kb on + strand, within EX28DRAFT_1874at 1886.681 kb on - strand, within EX28DRAFT_1874at 1886.681 kb on - strand, within EX28DRAFT_1874at 1886.817 kb on - strand, within EX28DRAFT_1874at 1886.854 kb on + strand, within EX28DRAFT_1874at 1887.035 kb on - strandat 1887.048 kb on + strandat 1887.131 kb on - strandat 1887.131 kb on - strandat 1887.133 kb on + strandat 1887.133 kb on + strandat 1887.166 kb on - strand, within EX28DRAFT_1875at 1887.243 kb on - strand, within EX28DRAFT_1875

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Per-strain Table

Position Strand Gene LocusTag Fraction MS_media with m-arsenite 1 mM
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1,885,207 + EX28DRAFT_1872 0.16 -3.3
1,885,208 - EX28DRAFT_1872 0.16 +0.0
1,885,208 - EX28DRAFT_1872 0.16 -1.3
1,885,425 + EX28DRAFT_1872 0.36 -1.3
1,885,426 - EX28DRAFT_1872 0.36 +1.0
1,885,847 + EX28DRAFT_1872 0.73 -1.2
1,885,946 + EX28DRAFT_1872 0.82 +0.6
1,885,947 - EX28DRAFT_1872 0.82 -0.5
1,885,950 + EX28DRAFT_1872 0.83 +0.1
1,885,986 - EX28DRAFT_1872 0.86 -0.1
1,886,043 - -0.4
1,886,259 - EX28DRAFT_1873 0.48 -0.6
1,886,261 - EX28DRAFT_1873 0.50 -2.5
1,886,261 - EX28DRAFT_1873 0.50 -2.5
1,886,373 + -0.1
1,886,396 - -0.7
1,886,437 + -0.6
1,886,506 + +1.5
1,886,562 + EX28DRAFT_1874 0.15 -1.4
1,886,569 - EX28DRAFT_1874 0.16 +0.2
1,886,584 - EX28DRAFT_1874 0.19 +0.1
1,886,643 - EX28DRAFT_1874 0.28 -0.7
1,886,645 + EX28DRAFT_1874 0.28 +0.7
1,886,677 - EX28DRAFT_1874 0.33 -0.2
1,886,680 + EX28DRAFT_1874 0.34 -1.7
1,886,681 - EX28DRAFT_1874 0.34 -3.6
1,886,681 - EX28DRAFT_1874 0.34 -0.3
1,886,817 - EX28DRAFT_1874 0.56 -0.4
1,886,854 + EX28DRAFT_1874 0.62 +0.6
1,887,035 - +0.8
1,887,048 + -0.1
1,887,131 - +0.2
1,887,131 - -0.9
1,887,133 + -4.5
1,887,133 + +1.8
1,887,166 - EX28DRAFT_1875 0.13 -1.0
1,887,243 - EX28DRAFT_1875 0.26 -2.4

Or see this region's nucleotide sequence