Experiment: MS_media with m-arsenite 1 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt EX28DRAFT_1815 and EX28DRAFT_1816 are separated by 149 nucleotides EX28DRAFT_1816 and EX28DRAFT_1817 are separated by 583 nucleotides
EX28DRAFT_1815: EX28DRAFT_1815 - Predicted membrane protein, at 1,831,356 to 1,832,429
_1815
EX28DRAFT_1816: EX28DRAFT_1816 - transcription-repair coupling factor (mfd), at 1,832,579 to 1,836,025
_1816
EX28DRAFT_1817: EX28DRAFT_1817 - Uncharacterized protein conserved in bacteria, at 1,836,609 to 1,837,574
_1817
Position (kb)
1832
1833
1834
1835
1836
1837 Strain fitness (log2 ratio)
-4
-3
-2
-1
0
1
2 at 1831.792 kb on - strand, within EX28DRAFT_1815 at 1831.792 kb on - strand, within EX28DRAFT_1815 at 1831.792 kb on - strand, within EX28DRAFT_1815 at 1831.798 kb on - strand, within EX28DRAFT_1815 at 1831.826 kb on + strand, within EX28DRAFT_1815 at 1831.931 kb on - strand, within EX28DRAFT_1815 at 1831.944 kb on + strand, within EX28DRAFT_1815 at 1831.947 kb on + strand, within EX28DRAFT_1815 at 1831.965 kb on + strand, within EX28DRAFT_1815 at 1832.067 kb on - strand, within EX28DRAFT_1815 at 1832.117 kb on - strand, within EX28DRAFT_1815 at 1832.122 kb on - strand, within EX28DRAFT_1815 at 1832.140 kb on - strand, within EX28DRAFT_1815 at 1832.196 kb on + strand, within EX28DRAFT_1815 at 1832.262 kb on + strand, within EX28DRAFT_1815 at 1832.321 kb on + strand, within EX28DRAFT_1815 at 1832.322 kb on - strand at 1832.322 kb on - strand at 1832.351 kb on + strand at 1832.399 kb on + strand at 1832.430 kb on + strand at 1832.430 kb on + strand at 1832.430 kb on + strand at 1832.430 kb on + strand at 1832.431 kb on - strand at 1832.431 kb on - strand at 1832.552 kb on - strand at 1832.574 kb on + strand at 1832.574 kb on + strand at 1832.575 kb on - strand at 1832.575 kb on - strand at 1832.595 kb on + strand at 1832.864 kb on + strand at 1832.865 kb on - strand at 1832.911 kb on + strand at 1832.942 kb on + strand, within EX28DRAFT_1816 at 1832.942 kb on + strand, within EX28DRAFT_1816 at 1833.195 kb on + strand, within EX28DRAFT_1816 at 1833.195 kb on + strand, within EX28DRAFT_1816 at 1833.195 kb on + strand, within EX28DRAFT_1816 at 1833.196 kb on - strand, within EX28DRAFT_1816 at 1833.210 kb on + strand, within EX28DRAFT_1816 at 1833.307 kb on + strand, within EX28DRAFT_1816 at 1833.307 kb on + strand, within EX28DRAFT_1816 at 1833.307 kb on + strand, within EX28DRAFT_1816 at 1833.308 kb on - strand, within EX28DRAFT_1816 at 1833.308 kb on - strand, within EX28DRAFT_1816 at 1833.311 kb on + strand, within EX28DRAFT_1816 at 1833.353 kb on + strand, within EX28DRAFT_1816 at 1833.402 kb on - strand, within EX28DRAFT_1816 at 1833.402 kb on - strand, within EX28DRAFT_1816 at 1833.402 kb on - strand, within EX28DRAFT_1816 at 1833.415 kb on + strand, within EX28DRAFT_1816 at 1833.595 kb on + strand, within EX28DRAFT_1816 at 1833.595 kb on + strand, within EX28DRAFT_1816 at 1833.596 kb on - strand, within EX28DRAFT_1816 at 1833.596 kb on - strand, within EX28DRAFT_1816 at 1833.771 kb on + strand, within EX28DRAFT_1816 at 1834.101 kb on - strand, within EX28DRAFT_1816 at 1834.116 kb on - strand, within EX28DRAFT_1816 at 1834.136 kb on + strand, within EX28DRAFT_1816 at 1834.136 kb on + strand, within EX28DRAFT_1816 at 1834.136 kb on + strand, within EX28DRAFT_1816 at 1834.137 kb on - strand, within EX28DRAFT_1816 at 1834.293 kb on - strand, within EX28DRAFT_1816 at 1834.328 kb on - strand, within EX28DRAFT_1816 at 1834.337 kb on - strand, within EX28DRAFT_1816 at 1834.423 kb on + strand, within EX28DRAFT_1816 at 1834.792 kb on + strand, within EX28DRAFT_1816 at 1834.793 kb on - strand, within EX28DRAFT_1816 at 1834.955 kb on + strand, within EX28DRAFT_1816 at 1834.956 kb on - strand, within EX28DRAFT_1816 at 1835.015 kb on + strand, within EX28DRAFT_1816 at 1835.015 kb on + strand, within EX28DRAFT_1816 at 1835.016 kb on - strand, within EX28DRAFT_1816 at 1835.016 kb on - strand, within EX28DRAFT_1816 at 1835.016 kb on - strand, within EX28DRAFT_1816 at 1835.016 kb on - strand, within EX28DRAFT_1816 at 1835.018 kb on + strand, within EX28DRAFT_1816 at 1835.018 kb on + strand, within EX28DRAFT_1816 at 1835.165 kb on - strand, within EX28DRAFT_1816 at 1835.501 kb on + strand, within EX28DRAFT_1816 at 1835.502 kb on - strand, within EX28DRAFT_1816 at 1835.502 kb on - strand, within EX28DRAFT_1816 at 1835.502 kb on - strand, within EX28DRAFT_1816 at 1835.502 kb on - strand, within EX28DRAFT_1816 at 1835.560 kb on - strand, within EX28DRAFT_1816 at 1835.657 kb on + strand, within EX28DRAFT_1816 at 1835.657 kb on + strand, within EX28DRAFT_1816 at 1835.658 kb on - strand, within EX28DRAFT_1816 at 1835.704 kb on + strand at 1835.704 kb on + strand at 1835.704 kb on + strand at 1835.705 kb on - strand at 1835.705 kb on - strand at 1835.705 kb on - strand at 1835.941 kb on + strand at 1835.986 kb on + strand at 1836.043 kb on - strand at 1836.061 kb on - strand at 1836.065 kb on + strand at 1836.110 kb on + strand at 1836.110 kb on + strand at 1836.110 kb on + strand at 1836.110 kb on + strand at 1836.111 kb on - strand at 1836.111 kb on - strand at 1836.244 kb on - strand at 1836.244 kb on - strand at 1836.350 kb on + strand at 1836.362 kb on + strand at 1836.362 kb on + strand at 1836.362 kb on + strand at 1836.392 kb on - strand at 1836.392 kb on - strand at 1836.503 kb on + strand at 1836.552 kb on + strand at 1836.557 kb on - strand at 1836.572 kb on + strand at 1836.846 kb on + strand, within EX28DRAFT_1817 at 1836.925 kb on + strand, within EX28DRAFT_1817 at 1836.948 kb on + strand, within EX28DRAFT_1817 at 1836.948 kb on + strand, within EX28DRAFT_1817 at 1836.951 kb on + strand, within EX28DRAFT_1817 at 1836.951 kb on + strand, within EX28DRAFT_1817 at 1836.951 kb on + strand, within EX28DRAFT_1817 at 1836.951 kb on + strand, within EX28DRAFT_1817 at 1836.951 kb on + strand, within EX28DRAFT_1817 at 1836.952 kb on - strand, within EX28DRAFT_1817 at 1836.952 kb on - strand, within EX28DRAFT_1817 at 1836.952 kb on - strand, within EX28DRAFT_1817 at 1836.985 kb on - strand, within EX28DRAFT_1817
Per-strain Table
Position Strand Gene LocusTag Fraction MS_media with m-arsenite 1 mM remove 1,831,792 - EX28DRAFT_1815 0.41 -2.3 1,831,792 - EX28DRAFT_1815 0.41 -0.7 1,831,792 - EX28DRAFT_1815 0.41 -0.3 1,831,798 - EX28DRAFT_1815 0.41 -0.1 1,831,826 + EX28DRAFT_1815 0.44 -4.1 1,831,931 - EX28DRAFT_1815 0.54 -0.1 1,831,944 + EX28DRAFT_1815 0.55 -0.4 1,831,947 + EX28DRAFT_1815 0.55 -0.5 1,831,965 + EX28DRAFT_1815 0.57 +0.0 1,832,067 - EX28DRAFT_1815 0.66 -0.6 1,832,117 - EX28DRAFT_1815 0.71 +1.7 1,832,122 - EX28DRAFT_1815 0.71 -0.4 1,832,140 - EX28DRAFT_1815 0.73 +0.2 1,832,196 + EX28DRAFT_1815 0.78 -0.5 1,832,262 + EX28DRAFT_1815 0.84 +0.5 1,832,321 + EX28DRAFT_1815 0.90 -0.6 1,832,322 - +0.1 1,832,322 - +0.2 1,832,351 + +0.2 1,832,399 + -2.9 1,832,430 + +0.1 1,832,430 + +0.5 1,832,430 + +0.1 1,832,430 + -0.2 1,832,431 - -0.1 1,832,431 - -1.2 1,832,552 - +1.7 1,832,574 + -1.2 1,832,574 + +1.7 1,832,575 - +1.0 1,832,575 - +1.9 1,832,595 + +0.7 1,832,864 + +0.6 1,832,865 - +0.6 1,832,911 + +0.6 1,832,942 + EX28DRAFT_1816 0.11 +0.0 1,832,942 + EX28DRAFT_1816 0.11 +0.3 1,833,195 + EX28DRAFT_1816 0.18 -3.4 1,833,195 + EX28DRAFT_1816 0.18 +0.6 1,833,195 + EX28DRAFT_1816 0.18 +0.9 1,833,196 - EX28DRAFT_1816 0.18 +1.5 1,833,210 + EX28DRAFT_1816 0.18 +0.1 1,833,307 + EX28DRAFT_1816 0.21 +0.7 1,833,307 + EX28DRAFT_1816 0.21 +0.7 1,833,307 + EX28DRAFT_1816 0.21 +1.4 1,833,308 - EX28DRAFT_1816 0.21 +1.1 1,833,308 - EX28DRAFT_1816 0.21 -1.7 1,833,311 + EX28DRAFT_1816 0.21 +2.2 1,833,353 + EX28DRAFT_1816 0.22 +0.3 1,833,402 - EX28DRAFT_1816 0.24 +1.0 1,833,402 - EX28DRAFT_1816 0.24 +0.8 1,833,402 - EX28DRAFT_1816 0.24 +0.4 1,833,415 + EX28DRAFT_1816 0.24 -0.1 1,833,595 + EX28DRAFT_1816 0.29 -0.5 1,833,595 + EX28DRAFT_1816 0.29 +0.8 1,833,596 - EX28DRAFT_1816 0.30 +2.0 1,833,596 - EX28DRAFT_1816 0.30 +0.8 1,833,771 + EX28DRAFT_1816 0.35 +0.5 1,834,101 - EX28DRAFT_1816 0.44 -0.4 1,834,116 - EX28DRAFT_1816 0.45 +1.2 1,834,136 + EX28DRAFT_1816 0.45 +1.2 1,834,136 + EX28DRAFT_1816 0.45 -0.0 1,834,136 + EX28DRAFT_1816 0.45 -0.2 1,834,137 - EX28DRAFT_1816 0.45 +0.3 1,834,293 - EX28DRAFT_1816 0.50 -2.3 1,834,328 - EX28DRAFT_1816 0.51 +0.1 1,834,337 - EX28DRAFT_1816 0.51 +0.0 1,834,423 + EX28DRAFT_1816 0.53 -2.9 1,834,792 + EX28DRAFT_1816 0.64 +0.4 1,834,793 - EX28DRAFT_1816 0.64 +1.2 1,834,955 + EX28DRAFT_1816 0.69 +0.8 1,834,956 - EX28DRAFT_1816 0.69 -0.8 1,835,015 + EX28DRAFT_1816 0.71 +1.3 1,835,015 + EX28DRAFT_1816 0.71 +0.2 1,835,016 - EX28DRAFT_1816 0.71 -3.4 1,835,016 - EX28DRAFT_1816 0.71 +0.4 1,835,016 - EX28DRAFT_1816 0.71 -0.1 1,835,016 - EX28DRAFT_1816 0.71 +0.0 1,835,018 + EX28DRAFT_1816 0.71 +0.6 1,835,018 + EX28DRAFT_1816 0.71 +0.5 1,835,165 - EX28DRAFT_1816 0.75 -1.8 1,835,501 + EX28DRAFT_1816 0.85 +0.5 1,835,502 - EX28DRAFT_1816 0.85 -0.7 1,835,502 - EX28DRAFT_1816 0.85 -0.7 1,835,502 - EX28DRAFT_1816 0.85 +1.3 1,835,502 - EX28DRAFT_1816 0.85 +0.5 1,835,560 - EX28DRAFT_1816 0.86 +2.1 1,835,657 + EX28DRAFT_1816 0.89 +0.8 1,835,657 + EX28DRAFT_1816 0.89 -0.3 1,835,658 - EX28DRAFT_1816 0.89 +0.4 1,835,704 + -0.2 1,835,704 + +0.4 1,835,704 + +0.4 1,835,705 - +0.8 1,835,705 - +0.4 1,835,705 - +1.9 1,835,941 + -0.3 1,835,986 + -1.0 1,836,043 - -0.4 1,836,061 - -0.4 1,836,065 + -3.3 1,836,110 + +0.1 1,836,110 + +0.5 1,836,110 + -0.2 1,836,110 + +0.1 1,836,111 - +1.0 1,836,111 - +0.3 1,836,244 - +0.8 1,836,244 - +0.2 1,836,350 + +0.0 1,836,362 + -0.0 1,836,362 + +0.5 1,836,362 + -0.7 1,836,392 - +0.6 1,836,392 - -0.4 1,836,503 + -4.5 1,836,552 + +0.5 1,836,557 - -0.7 1,836,572 + -0.2 1,836,846 + EX28DRAFT_1817 0.25 -0.3 1,836,925 + EX28DRAFT_1817 0.33 +0.4 1,836,948 + EX28DRAFT_1817 0.35 -0.4 1,836,948 + EX28DRAFT_1817 0.35 +0.0 1,836,951 + EX28DRAFT_1817 0.35 +0.9 1,836,951 + EX28DRAFT_1817 0.35 -0.5 1,836,951 + EX28DRAFT_1817 0.35 -0.4 1,836,951 + EX28DRAFT_1817 0.35 -0.6 1,836,951 + EX28DRAFT_1817 0.35 -0.4 1,836,952 - EX28DRAFT_1817 0.36 +0.5 1,836,952 - EX28DRAFT_1817 0.36 +0.7 1,836,952 - EX28DRAFT_1817 0.36 -0.4 1,836,985 - EX28DRAFT_1817 0.39 -1.4
Or see this region's nucleotide sequence