Experiment: MS_media with m-arsenite 1 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt EX28DRAFT_1789 and EX28DRAFT_1790 are separated by 125 nucleotides EX28DRAFT_1790 and EX28DRAFT_1791 are separated by 205 nucleotides
EX28DRAFT_1789: EX28DRAFT_1789 - diguanylate cyclase (GGDEF) domain, at 1,802,245 to 1,803,717
_1789
EX28DRAFT_1790: EX28DRAFT_1790 - FOG: EAL domain, at 1,803,843 to 1,805,393
_1790
EX28DRAFT_1791: EX28DRAFT_1791 - Predicted signal transduction protein containing sensor and EAL domains, at 1,805,599 to 1,807,098
_1791
Position (kb)
1803
1804
1805
1806 Strain fitness (log2 ratio)
-4
-3
-2
-1
0
1 at 1802.948 kb on + strand, within EX28DRAFT_1789 at 1802.949 kb on - strand, within EX28DRAFT_1789 at 1802.954 kb on + strand, within EX28DRAFT_1789 at 1802.955 kb on - strand, within EX28DRAFT_1789 at 1803.016 kb on + strand, within EX28DRAFT_1789 at 1803.016 kb on + strand, within EX28DRAFT_1789 at 1803.017 kb on - strand, within EX28DRAFT_1789 at 1803.201 kb on + strand, within EX28DRAFT_1789 at 1803.234 kb on + strand, within EX28DRAFT_1789 at 1803.235 kb on - strand, within EX28DRAFT_1789 at 1803.384 kb on + strand, within EX28DRAFT_1789 at 1803.444 kb on + strand, within EX28DRAFT_1789 at 1803.445 kb on - strand, within EX28DRAFT_1789 at 1803.445 kb on - strand, within EX28DRAFT_1789 at 1803.445 kb on - strand, within EX28DRAFT_1789 at 1803.520 kb on - strand, within EX28DRAFT_1789 at 1803.520 kb on - strand, within EX28DRAFT_1789 at 1803.571 kb on - strand at 1803.598 kb on - strand at 1803.681 kb on + strand at 1803.815 kb on + strand at 1803.815 kb on + strand at 1803.816 kb on - strand at 1803.816 kb on - strand at 1803.845 kb on - strand at 1803.899 kb on - strand at 1803.919 kb on + strand at 1803.920 kb on - strand at 1803.948 kb on - strand at 1804.100 kb on + strand, within EX28DRAFT_1790 at 1804.101 kb on - strand, within EX28DRAFT_1790 at 1804.197 kb on - strand, within EX28DRAFT_1790 at 1804.328 kb on + strand, within EX28DRAFT_1790 at 1804.328 kb on + strand, within EX28DRAFT_1790 at 1804.328 kb on + strand, within EX28DRAFT_1790 at 1804.356 kb on - strand, within EX28DRAFT_1790 at 1804.434 kb on + strand, within EX28DRAFT_1790 at 1804.436 kb on + strand, within EX28DRAFT_1790 at 1804.437 kb on - strand, within EX28DRAFT_1790 at 1804.448 kb on + strand, within EX28DRAFT_1790 at 1804.484 kb on + strand, within EX28DRAFT_1790 at 1804.531 kb on + strand, within EX28DRAFT_1790 at 1804.531 kb on + strand, within EX28DRAFT_1790 at 1804.570 kb on + strand, within EX28DRAFT_1790 at 1804.601 kb on + strand, within EX28DRAFT_1790 at 1804.605 kb on + strand, within EX28DRAFT_1790 at 1804.605 kb on + strand, within EX28DRAFT_1790 at 1804.606 kb on - strand, within EX28DRAFT_1790 at 1804.606 kb on - strand, within EX28DRAFT_1790 at 1804.640 kb on - strand, within EX28DRAFT_1790 at 1804.683 kb on - strand, within EX28DRAFT_1790 at 1804.683 kb on - strand, within EX28DRAFT_1790 at 1805.022 kb on + strand, within EX28DRAFT_1790 at 1805.023 kb on - strand, within EX28DRAFT_1790 at 1805.230 kb on - strand, within EX28DRAFT_1790 at 1805.261 kb on + strand at 1805.261 kb on + strand at 1805.262 kb on - strand at 1805.262 kb on - strand at 1805.286 kb on + strand at 1805.287 kb on - strand at 1805.287 kb on - strand at 1805.297 kb on + strand at 1805.298 kb on - strand at 1805.436 kb on - strand at 1805.623 kb on - strand at 1805.672 kb on + strand at 1805.672 kb on + strand at 1805.673 kb on - strand at 1805.823 kb on + strand, within EX28DRAFT_1791 at 1805.829 kb on + strand, within EX28DRAFT_1791 at 1805.829 kb on + strand, within EX28DRAFT_1791 at 1805.830 kb on - strand, within EX28DRAFT_1791 at 1805.859 kb on + strand, within EX28DRAFT_1791 at 1805.938 kb on - strand, within EX28DRAFT_1791 at 1806.013 kb on - strand, within EX28DRAFT_1791 at 1806.013 kb on - strand, within EX28DRAFT_1791 at 1806.015 kb on + strand, within EX28DRAFT_1791 at 1806.021 kb on + strand, within EX28DRAFT_1791 at 1806.044 kb on - strand, within EX28DRAFT_1791 at 1806.216 kb on - strand, within EX28DRAFT_1791 at 1806.312 kb on - strand, within EX28DRAFT_1791 at 1806.312 kb on - strand, within EX28DRAFT_1791 at 1806.316 kb on - strand, within EX28DRAFT_1791 at 1806.324 kb on + strand, within EX28DRAFT_1791 at 1806.328 kb on + strand, within EX28DRAFT_1791 at 1806.329 kb on - strand, within EX28DRAFT_1791 at 1806.354 kb on + strand, within EX28DRAFT_1791 at 1806.354 kb on + strand, within EX28DRAFT_1791 at 1806.355 kb on - strand, within EX28DRAFT_1791 at 1806.363 kb on - strand, within EX28DRAFT_1791
Per-strain Table
Position Strand Gene LocusTag Fraction MS_media with m-arsenite 1 mM remove 1,802,948 + EX28DRAFT_1789 0.48 +0.2 1,802,949 - EX28DRAFT_1789 0.48 -1.3 1,802,954 + EX28DRAFT_1789 0.48 +0.4 1,802,955 - EX28DRAFT_1789 0.48 +0.1 1,803,016 + EX28DRAFT_1789 0.52 -0.8 1,803,016 + EX28DRAFT_1789 0.52 -2.6 1,803,017 - EX28DRAFT_1789 0.52 +0.9 1,803,201 + EX28DRAFT_1789 0.65 +0.0 1,803,234 + EX28DRAFT_1789 0.67 -0.3 1,803,235 - EX28DRAFT_1789 0.67 -3.2 1,803,384 + EX28DRAFT_1789 0.77 -0.7 1,803,444 + EX28DRAFT_1789 0.81 -0.4 1,803,445 - EX28DRAFT_1789 0.81 -1.7 1,803,445 - EX28DRAFT_1789 0.81 -2.8 1,803,445 - EX28DRAFT_1789 0.81 +1.4 1,803,520 - EX28DRAFT_1789 0.87 -1.1 1,803,520 - EX28DRAFT_1789 0.87 +0.5 1,803,571 - +0.1 1,803,598 - +0.1 1,803,681 + -1.9 1,803,815 + -0.9 1,803,815 + +0.4 1,803,816 - -4.5 1,803,816 - -0.7 1,803,845 - -0.5 1,803,899 - -0.6 1,803,919 + -0.8 1,803,920 - -0.5 1,803,948 - -0.2 1,804,100 + EX28DRAFT_1790 0.17 -1.0 1,804,101 - EX28DRAFT_1790 0.17 -0.2 1,804,197 - EX28DRAFT_1790 0.23 -0.7 1,804,328 + EX28DRAFT_1790 0.31 -0.5 1,804,328 + EX28DRAFT_1790 0.31 +0.6 1,804,328 + EX28DRAFT_1790 0.31 +0.0 1,804,356 - EX28DRAFT_1790 0.33 -0.5 1,804,434 + EX28DRAFT_1790 0.38 +0.7 1,804,436 + EX28DRAFT_1790 0.38 +0.2 1,804,437 - EX28DRAFT_1790 0.38 +0.3 1,804,448 + EX28DRAFT_1790 0.39 -3.8 1,804,484 + EX28DRAFT_1790 0.41 -0.7 1,804,531 + EX28DRAFT_1790 0.44 -0.8 1,804,531 + EX28DRAFT_1790 0.44 -1.4 1,804,570 + EX28DRAFT_1790 0.47 +0.3 1,804,601 + EX28DRAFT_1790 0.49 -1.8 1,804,605 + EX28DRAFT_1790 0.49 -0.2 1,804,605 + EX28DRAFT_1790 0.49 -0.1 1,804,606 - EX28DRAFT_1790 0.49 +0.4 1,804,606 - EX28DRAFT_1790 0.49 +0.5 1,804,640 - EX28DRAFT_1790 0.51 -0.7 1,804,683 - EX28DRAFT_1790 0.54 -0.6 1,804,683 - EX28DRAFT_1790 0.54 -0.3 1,805,022 + EX28DRAFT_1790 0.76 -0.4 1,805,023 - EX28DRAFT_1790 0.76 -0.9 1,805,230 - EX28DRAFT_1790 0.89 -0.7 1,805,261 + -0.9 1,805,261 + +0.1 1,805,262 - +0.7 1,805,262 - -0.2 1,805,286 + +1.0 1,805,287 - +0.3 1,805,287 - -0.6 1,805,297 + -2.6 1,805,298 - +0.4 1,805,436 - +0.1 1,805,623 - -1.7 1,805,672 + +0.8 1,805,672 + +1.2 1,805,673 - -0.3 1,805,823 + EX28DRAFT_1791 0.15 -3.9 1,805,829 + EX28DRAFT_1791 0.15 -0.2 1,805,829 + EX28DRAFT_1791 0.15 -1.1 1,805,830 - EX28DRAFT_1791 0.15 -0.3 1,805,859 + EX28DRAFT_1791 0.17 -3.7 1,805,938 - EX28DRAFT_1791 0.23 +0.5 1,806,013 - EX28DRAFT_1791 0.28 +0.1 1,806,013 - EX28DRAFT_1791 0.28 +0.2 1,806,015 + EX28DRAFT_1791 0.28 -0.0 1,806,021 + EX28DRAFT_1791 0.28 -0.6 1,806,044 - EX28DRAFT_1791 0.30 +0.0 1,806,216 - EX28DRAFT_1791 0.41 -0.3 1,806,312 - EX28DRAFT_1791 0.48 +0.2 1,806,312 - EX28DRAFT_1791 0.48 +0.1 1,806,316 - EX28DRAFT_1791 0.48 +0.1 1,806,324 + EX28DRAFT_1791 0.48 -4.3 1,806,328 + EX28DRAFT_1791 0.49 -4.2 1,806,329 - EX28DRAFT_1791 0.49 -0.1 1,806,354 + EX28DRAFT_1791 0.50 -0.5 1,806,354 + EX28DRAFT_1791 0.50 -2.1 1,806,355 - EX28DRAFT_1791 0.50 +0.6 1,806,363 - EX28DRAFT_1791 0.51 +0.2
Or see this region's nucleotide sequence