Strain Fitness in Enterobacter asburiae PDN3 around EX28DRAFT_1759

Experiment: MS_media with m-arsenite 1 mM

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntEX28DRAFT_1758 and EX28DRAFT_1759 overlap by 4 nucleotidesEX28DRAFT_1759 and EX28DRAFT_1760 overlap by 8 nucleotidesEX28DRAFT_1760 and EX28DRAFT_1761 are separated by 75 nucleotides EX28DRAFT_1758: EX28DRAFT_1758 - Rhodanese-related sulfurtransferase, at 1,773,596 to 1,774,903 _1758 EX28DRAFT_1759: EX28DRAFT_1759 - Phosphatidylglycerophosphate synthase, at 1,774,900 to 1,775,517 _1759 EX28DRAFT_1760: EX28DRAFT_1760 - Uncharacterized conserved protein, at 1,775,510 to 1,776,079 _1760 EX28DRAFT_1761: EX28DRAFT_1761 - NUDIX domain, at 1,776,155 to 1,776,571 _1761 Position (kb) 1774 1775 1776Strain fitness (log2 ratio) -2 -1 0 1 2at 1774.207 kb on + strand, within EX28DRAFT_1758at 1774.328 kb on + strand, within EX28DRAFT_1758at 1774.347 kb on + strand, within EX28DRAFT_1758at 1774.347 kb on + strand, within EX28DRAFT_1758at 1774.577 kb on + strand, within EX28DRAFT_1758at 1774.780 kb on + strandat 1774.784 kb on + strandat 1774.784 kb on + strandat 1774.785 kb on - strandat 1774.785 kb on - strandat 1774.785 kb on - strandat 1774.820 kb on + strandat 1774.928 kb on + strandat 1774.929 kb on - strandat 1774.996 kb on - strand, within EX28DRAFT_1759at 1775.069 kb on + strand, within EX28DRAFT_1759at 1775.069 kb on + strand, within EX28DRAFT_1759at 1775.240 kb on + strand, within EX28DRAFT_1759at 1775.240 kb on + strand, within EX28DRAFT_1759at 1775.241 kb on - strand, within EX28DRAFT_1759at 1775.451 kb on + strand, within EX28DRAFT_1759at 1775.576 kb on - strand, within EX28DRAFT_1760at 1775.779 kb on + strand, within EX28DRAFT_1760at 1776.026 kb on + strandat 1776.119 kb on + strandat 1776.122 kb on + strandat 1776.205 kb on + strand, within EX28DRAFT_1761at 1776.206 kb on - strand, within EX28DRAFT_1761at 1776.206 kb on - strand, within EX28DRAFT_1761at 1776.305 kb on - strand, within EX28DRAFT_1761at 1776.353 kb on + strand, within EX28DRAFT_1761at 1776.354 kb on - strand, within EX28DRAFT_1761at 1776.354 kb on - strand, within EX28DRAFT_1761at 1776.469 kb on + strand, within EX28DRAFT_1761

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction MS_media with m-arsenite 1 mM
remove
1,774,207 + EX28DRAFT_1758 0.47 +0.0
1,774,328 + EX28DRAFT_1758 0.56 -0.4
1,774,347 + EX28DRAFT_1758 0.57 +0.9
1,774,347 + EX28DRAFT_1758 0.57 +1.0
1,774,577 + EX28DRAFT_1758 0.75 -0.8
1,774,780 + +0.1
1,774,784 + +0.5
1,774,784 + -0.3
1,774,785 - +2.4
1,774,785 - -1.1
1,774,785 - +2.2
1,774,820 + -1.3
1,774,928 + +0.6
1,774,929 - +0.4
1,774,996 - EX28DRAFT_1759 0.16 +1.3
1,775,069 + EX28DRAFT_1759 0.27 -0.3
1,775,069 + EX28DRAFT_1759 0.27 -2.7
1,775,240 + EX28DRAFT_1759 0.55 -2.5
1,775,240 + EX28DRAFT_1759 0.55 -0.9
1,775,241 - EX28DRAFT_1759 0.55 -0.5
1,775,451 + EX28DRAFT_1759 0.89 -0.0
1,775,576 - EX28DRAFT_1760 0.12 -0.3
1,775,779 + EX28DRAFT_1760 0.47 +0.0
1,776,026 + +0.2
1,776,119 + -0.6
1,776,122 + +0.4
1,776,205 + EX28DRAFT_1761 0.12 -0.9
1,776,206 - EX28DRAFT_1761 0.12 -1.1
1,776,206 - EX28DRAFT_1761 0.12 -0.6
1,776,305 - EX28DRAFT_1761 0.36 +0.3
1,776,353 + EX28DRAFT_1761 0.47 +0.0
1,776,354 - EX28DRAFT_1761 0.48 -0.9
1,776,354 - EX28DRAFT_1761 0.48 -0.9
1,776,469 + EX28DRAFT_1761 0.75 +0.1

Or see this region's nucleotide sequence