Experiment: MS_media with m-arsenite 1 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt EX28DRAFT_1739 and EX28DRAFT_1740 are separated by 29 nucleotides EX28DRAFT_1740 and EX28DRAFT_1741 are separated by 47 nucleotides EX28DRAFT_1741 and EX28DRAFT_1742 are separated by 79 nucleotides EX28DRAFT_1742 and EX28DRAFT_1743 are separated by 280 nucleotides
EX28DRAFT_1739: EX28DRAFT_1739 - Helix-turn-helix domain/Cupin domain, at 1,754,865 to 1,755,683
_1739
EX28DRAFT_1740: EX28DRAFT_1740 - Phosphotransferase system cellobiose-specific component IIA, at 1,755,713 to 1,756,060
_1740
EX28DRAFT_1741: EX28DRAFT_1741 - phosphotransferase system, cellobiose specific, IIC component, at 1,756,108 to 1,757,466
_1741
EX28DRAFT_1742: EX28DRAFT_1742 - PTS system, lactose/cellobiose family IIB component, at 1,757,546 to 1,757,863
_1742
EX28DRAFT_1743: EX28DRAFT_1743 - SmpA / OmlA family, at 1,758,144 to 1,758,488
_1743
Position (kb)
1756
1757
1758 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2 at 1755.122 kb on + strand, within EX28DRAFT_1739 at 1755.155 kb on + strand, within EX28DRAFT_1739 at 1755.251 kb on - strand, within EX28DRAFT_1739 at 1755.333 kb on - strand, within EX28DRAFT_1739 at 1755.394 kb on + strand, within EX28DRAFT_1739 at 1755.394 kb on + strand, within EX28DRAFT_1739 at 1755.395 kb on - strand, within EX28DRAFT_1739 at 1755.575 kb on - strand, within EX28DRAFT_1739 at 1755.578 kb on - strand, within EX28DRAFT_1739 at 1755.578 kb on - strand, within EX28DRAFT_1739 at 1755.623 kb on + strand at 1755.954 kb on + strand, within EX28DRAFT_1740 at 1756.042 kb on + strand at 1756.109 kb on + strand at 1756.199 kb on + strand at 1756.199 kb on + strand at 1756.199 kb on + strand at 1756.199 kb on + strand at 1756.200 kb on - strand at 1756.200 kb on - strand at 1756.337 kb on + strand, within EX28DRAFT_1741 at 1756.337 kb on + strand, within EX28DRAFT_1741 at 1756.338 kb on - strand, within EX28DRAFT_1741 at 1756.563 kb on + strand, within EX28DRAFT_1741 at 1756.565 kb on + strand, within EX28DRAFT_1741 at 1756.565 kb on + strand, within EX28DRAFT_1741 at 1756.565 kb on + strand, within EX28DRAFT_1741 at 1756.565 kb on + strand, within EX28DRAFT_1741 at 1756.566 kb on - strand, within EX28DRAFT_1741 at 1756.566 kb on - strand, within EX28DRAFT_1741 at 1756.681 kb on - strand, within EX28DRAFT_1741 at 1756.758 kb on - strand, within EX28DRAFT_1741 at 1756.803 kb on + strand, within EX28DRAFT_1741 at 1756.804 kb on - strand, within EX28DRAFT_1741 at 1756.882 kb on - strand, within EX28DRAFT_1741 at 1756.971 kb on + strand, within EX28DRAFT_1741 at 1756.971 kb on + strand, within EX28DRAFT_1741 at 1756.971 kb on + strand, within EX28DRAFT_1741 at 1756.972 kb on - strand, within EX28DRAFT_1741 at 1757.058 kb on - strand, within EX28DRAFT_1741 at 1757.110 kb on + strand, within EX28DRAFT_1741 at 1757.187 kb on + strand, within EX28DRAFT_1741 at 1757.199 kb on + strand, within EX28DRAFT_1741 at 1757.200 kb on - strand, within EX28DRAFT_1741 at 1757.276 kb on - strand, within EX28DRAFT_1741 at 1757.282 kb on + strand, within EX28DRAFT_1741 at 1757.323 kb on - strand, within EX28DRAFT_1741 at 1757.411 kb on - strand at 1757.461 kb on - strand at 1757.481 kb on - strand at 1757.585 kb on - strand, within EX28DRAFT_1742 at 1757.677 kb on + strand, within EX28DRAFT_1742 at 1757.677 kb on + strand, within EX28DRAFT_1742 at 1757.677 kb on + strand, within EX28DRAFT_1742 at 1757.677 kb on + strand, within EX28DRAFT_1742 at 1757.679 kb on + strand, within EX28DRAFT_1742 at 1757.845 kb on - strand at 1757.845 kb on - strand at 1757.848 kb on + strand at 1757.848 kb on + strand at 1757.848 kb on + strand at 1757.848 kb on + strand at 1757.848 kb on + strand at 1757.849 kb on - strand at 1757.849 kb on - strand at 1757.877 kb on + strand at 1757.877 kb on + strand at 1757.877 kb on + strand at 1757.878 kb on - strand at 1757.879 kb on + strand at 1757.880 kb on - strand at 1757.880 kb on - strand at 1757.880 kb on - strand at 1757.880 kb on - strand at 1757.880 kb on - strand at 1757.932 kb on - strand at 1757.932 kb on - strand at 1757.941 kb on - strand at 1757.965 kb on + strand at 1757.966 kb on - strand at 1757.967 kb on + strand at 1757.968 kb on - strand at 1757.968 kb on - strand at 1757.968 kb on - strand at 1757.968 kb on - strand at 1758.156 kb on - strand at 1758.241 kb on + strand, within EX28DRAFT_1743 at 1758.241 kb on + strand, within EX28DRAFT_1743 at 1758.242 kb on - strand, within EX28DRAFT_1743 at 1758.275 kb on + strand, within EX28DRAFT_1743 at 1758.275 kb on + strand, within EX28DRAFT_1743 at 1758.275 kb on + strand, within EX28DRAFT_1743 at 1758.277 kb on + strand, within EX28DRAFT_1743 at 1758.277 kb on + strand, within EX28DRAFT_1743 at 1758.277 kb on + strand, within EX28DRAFT_1743 at 1758.278 kb on - strand, within EX28DRAFT_1743 at 1758.278 kb on - strand, within EX28DRAFT_1743 at 1758.382 kb on - strand, within EX28DRAFT_1743 at 1758.385 kb on - strand, within EX28DRAFT_1743 at 1758.425 kb on + strand, within EX28DRAFT_1743 at 1758.440 kb on + strand, within EX28DRAFT_1743 at 1758.440 kb on + strand, within EX28DRAFT_1743
Per-strain Table
Position Strand Gene LocusTag Fraction MS_media with m-arsenite 1 mM remove 1,755,122 + EX28DRAFT_1739 0.31 +0.2 1,755,155 + EX28DRAFT_1739 0.35 -0.4 1,755,251 - EX28DRAFT_1739 0.47 -1.5 1,755,333 - EX28DRAFT_1739 0.57 -1.3 1,755,394 + EX28DRAFT_1739 0.65 -3.4 1,755,394 + EX28DRAFT_1739 0.65 -0.2 1,755,395 - EX28DRAFT_1739 0.65 -1.8 1,755,575 - EX28DRAFT_1739 0.87 +0.4 1,755,578 - EX28DRAFT_1739 0.87 -2.0 1,755,578 - EX28DRAFT_1739 0.87 +0.5 1,755,623 + -1.6 1,755,954 + EX28DRAFT_1740 0.69 +1.4 1,756,042 + -0.0 1,756,109 + +0.2 1,756,199 + -0.2 1,756,199 + -0.9 1,756,199 + +0.1 1,756,199 + -0.8 1,756,200 - -0.0 1,756,200 - +0.1 1,756,337 + EX28DRAFT_1741 0.17 -1.5 1,756,337 + EX28DRAFT_1741 0.17 +1.6 1,756,338 - EX28DRAFT_1741 0.17 +0.7 1,756,563 + EX28DRAFT_1741 0.33 -0.4 1,756,565 + EX28DRAFT_1741 0.34 -0.4 1,756,565 + EX28DRAFT_1741 0.34 +0.9 1,756,565 + EX28DRAFT_1741 0.34 -0.3 1,756,565 + EX28DRAFT_1741 0.34 +0.4 1,756,566 - EX28DRAFT_1741 0.34 +0.2 1,756,566 - EX28DRAFT_1741 0.34 -0.7 1,756,681 - EX28DRAFT_1741 0.42 -2.2 1,756,758 - EX28DRAFT_1741 0.48 -0.1 1,756,803 + EX28DRAFT_1741 0.51 +0.9 1,756,804 - EX28DRAFT_1741 0.51 +0.4 1,756,882 - EX28DRAFT_1741 0.57 -0.0 1,756,971 + EX28DRAFT_1741 0.64 -0.0 1,756,971 + EX28DRAFT_1741 0.64 +0.1 1,756,971 + EX28DRAFT_1741 0.64 -0.7 1,756,972 - EX28DRAFT_1741 0.64 +0.4 1,757,058 - EX28DRAFT_1741 0.70 -1.5 1,757,110 + EX28DRAFT_1741 0.74 +2.0 1,757,187 + EX28DRAFT_1741 0.79 +0.4 1,757,199 + EX28DRAFT_1741 0.80 -0.2 1,757,200 - EX28DRAFT_1741 0.80 -0.8 1,757,276 - EX28DRAFT_1741 0.86 -0.0 1,757,282 + EX28DRAFT_1741 0.86 +0.6 1,757,323 - EX28DRAFT_1741 0.89 -0.7 1,757,411 - +0.7 1,757,461 - -0.8 1,757,481 - +1.1 1,757,585 - EX28DRAFT_1742 0.12 +0.2 1,757,677 + EX28DRAFT_1742 0.41 -2.6 1,757,677 + EX28DRAFT_1742 0.41 +2.6 1,757,677 + EX28DRAFT_1742 0.41 +0.3 1,757,677 + EX28DRAFT_1742 0.41 +0.6 1,757,679 + EX28DRAFT_1742 0.42 +0.7 1,757,845 - +0.2 1,757,845 - -0.5 1,757,848 + +0.2 1,757,848 + +0.7 1,757,848 + -0.1 1,757,848 + -0.2 1,757,848 + +0.9 1,757,849 - +0.5 1,757,849 - -3.4 1,757,877 + +0.5 1,757,877 + +0.7 1,757,877 + -0.6 1,757,878 - -0.4 1,757,879 + +0.1 1,757,880 - -0.1 1,757,880 - -0.1 1,757,880 - +0.5 1,757,880 - +0.9 1,757,880 - -1.9 1,757,932 - -0.7 1,757,932 - -0.6 1,757,941 - +1.6 1,757,965 + -0.3 1,757,966 - -1.8 1,757,967 + +0.2 1,757,968 - -0.7 1,757,968 - +0.1 1,757,968 - -2.1 1,757,968 - -1.1 1,758,156 - -0.1 1,758,241 + EX28DRAFT_1743 0.28 -2.3 1,758,241 + EX28DRAFT_1743 0.28 +0.3 1,758,242 - EX28DRAFT_1743 0.28 +0.1 1,758,275 + EX28DRAFT_1743 0.38 -0.3 1,758,275 + EX28DRAFT_1743 0.38 +1.2 1,758,275 + EX28DRAFT_1743 0.38 +1.5 1,758,277 + EX28DRAFT_1743 0.39 -0.3 1,758,277 + EX28DRAFT_1743 0.39 +0.4 1,758,277 + EX28DRAFT_1743 0.39 +0.7 1,758,278 - EX28DRAFT_1743 0.39 +0.3 1,758,278 - EX28DRAFT_1743 0.39 +1.0 1,758,382 - EX28DRAFT_1743 0.69 +0.4 1,758,385 - EX28DRAFT_1743 0.70 -0.9 1,758,425 + EX28DRAFT_1743 0.81 +1.0 1,758,440 + EX28DRAFT_1743 0.86 -0.4 1,758,440 + EX28DRAFT_1743 0.86 +0.9
Or see this region's nucleotide sequence