Experiment: MS_media with m-arsenite 1 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt EX28DRAFT_1678 and EX28DRAFT_1679 are separated by 377 nucleotides EX28DRAFT_1679 and EX28DRAFT_1680 are separated by 309 nucleotides EX28DRAFT_1680 and EX28DRAFT_1681 are separated by 60 nucleotides
EX28DRAFT_1678: EX28DRAFT_1678 - Cystathionine beta-lyases/cystathionine gamma-synthases, at 1,690,129 to 1,691,274
_1678
EX28DRAFT_1679: EX28DRAFT_1679 - pyruvate kinase, at 1,691,652 to 1,693,073
_1679
EX28DRAFT_1680: EX28DRAFT_1680 - Murein lipoprotein, at 1,693,383 to 1,693,619
_1680
EX28DRAFT_1681: EX28DRAFT_1681 - Uncharacterized protein conserved in bacteria, at 1,693,680 to 1,694,693
_1681
Position (kb)
1691
1692
1693
1694 Strain fitness (log2 ratio)
-4
-3
-2
-1
0
1
2 at 1690.718 kb on - strand, within EX28DRAFT_1678 at 1690.718 kb on - strand, within EX28DRAFT_1678 at 1691.308 kb on - strand at 1691.342 kb on + strand at 1691.342 kb on + strand at 1691.345 kb on + strand at 1691.412 kb on - strand at 1691.413 kb on + strand at 1691.470 kb on + strand at 1691.470 kb on + strand at 1691.471 kb on - strand at 1691.543 kb on - strand at 1691.562 kb on + strand at 1691.563 kb on - strand at 1691.563 kb on - strand at 1691.563 kb on - strand at 1691.642 kb on + strand at 1691.770 kb on - strand at 1691.810 kb on - strand, within EX28DRAFT_1679 at 1691.980 kb on - strand, within EX28DRAFT_1679 at 1691.980 kb on - strand, within EX28DRAFT_1679 at 1692.609 kb on + strand, within EX28DRAFT_1679 at 1692.685 kb on - strand, within EX28DRAFT_1679 at 1692.816 kb on - strand, within EX28DRAFT_1679 at 1692.820 kb on - strand, within EX28DRAFT_1679 at 1693.030 kb on + strand at 1693.066 kb on + strand at 1693.072 kb on - strand at 1693.174 kb on + strand at 1693.210 kb on + strand at 1693.211 kb on - strand at 1693.284 kb on + strand at 1693.750 kb on - strand at 1693.750 kb on - strand at 1693.755 kb on - strand at 1693.946 kb on + strand, within EX28DRAFT_1681 at 1693.948 kb on + strand, within EX28DRAFT_1681 at 1693.948 kb on + strand, within EX28DRAFT_1681 at 1694.039 kb on + strand, within EX28DRAFT_1681 at 1694.040 kb on - strand, within EX28DRAFT_1681 at 1694.064 kb on - strand, within EX28DRAFT_1681
Per-strain Table
Position Strand Gene LocusTag Fraction MS_media with m-arsenite 1 mM remove 1,690,718 - EX28DRAFT_1678 0.51 -2.9 1,690,718 - EX28DRAFT_1678 0.51 -2.5 1,691,308 - -0.8 1,691,342 + -0.2 1,691,342 + +1.9 1,691,345 + -2.2 1,691,412 - -2.0 1,691,413 + +0.1 1,691,470 + -0.1 1,691,470 + +0.8 1,691,471 - +2.5 1,691,543 - -0.6 1,691,562 + -1.4 1,691,563 - -3.3 1,691,563 - -1.3 1,691,563 - +0.3 1,691,642 + +0.2 1,691,770 - -1.0 1,691,810 - EX28DRAFT_1679 0.11 -0.5 1,691,980 - EX28DRAFT_1679 0.23 -3.2 1,691,980 - EX28DRAFT_1679 0.23 +0.4 1,692,609 + EX28DRAFT_1679 0.67 -3.8 1,692,685 - EX28DRAFT_1679 0.73 -0.2 1,692,816 - EX28DRAFT_1679 0.82 -1.1 1,692,820 - EX28DRAFT_1679 0.82 -2.5 1,693,030 + -0.6 1,693,066 + -1.1 1,693,072 - -0.4 1,693,174 + -0.4 1,693,210 + +0.2 1,693,211 - -2.1 1,693,284 + -0.1 1,693,750 - +0.2 1,693,750 - +0.1 1,693,755 - -0.1 1,693,946 + EX28DRAFT_1681 0.26 -2.7 1,693,948 + EX28DRAFT_1681 0.26 +0.4 1,693,948 + EX28DRAFT_1681 0.26 -1.3 1,694,039 + EX28DRAFT_1681 0.35 -0.6 1,694,040 - EX28DRAFT_1681 0.36 +0.3 1,694,064 - EX28DRAFT_1681 0.38 +0.2
Or see this region's nucleotide sequence