Experiment: MS_media with m-arsenite 1 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt EX28DRAFT_1633 and EX28DRAFT_1634 are separated by 125 nucleotides EX28DRAFT_1634 and EX28DRAFT_1635 are separated by 42 nucleotides EX28DRAFT_1635 and EX28DRAFT_1636 are separated by 93 nucleotides
EX28DRAFT_1633: EX28DRAFT_1633 - tyrosyl-tRNA synthetase (EC 6.1.1.1), at 1,650,843 to 1,652,117
_1633
EX28DRAFT_1634: EX28DRAFT_1634 - Pyridoxamine 5'-phosphate oxidase (EC 1.4.3.5), at 1,652,243 to 1,652,914
_1634
EX28DRAFT_1635: EX28DRAFT_1635 - Predicted periplasmic protein, at 1,652,957 to 1,653,280
_1635
EX28DRAFT_1636: EX28DRAFT_1636 - Predicted molecular chaperone distantly related to HSP70-fold metalloproteases, at 1,653,374 to 1,654,498
_1636
Position (kb)
1652
1653
1654 Strain fitness (log2 ratio)
-2
-1
0
1 at 1652.132 kb on - strand at 1652.132 kb on - strand at 1652.188 kb on - strand at 1652.188 kb on - strand at 1652.244 kb on + strand at 1652.244 kb on + strand at 1653.012 kb on + strand, within EX28DRAFT_1635 at 1653.048 kb on + strand, within EX28DRAFT_1635 at 1653.048 kb on + strand, within EX28DRAFT_1635 at 1653.048 kb on + strand, within EX28DRAFT_1635 at 1653.061 kb on + strand, within EX28DRAFT_1635 at 1653.062 kb on - strand, within EX28DRAFT_1635 at 1653.118 kb on - strand, within EX28DRAFT_1635 at 1653.183 kb on + strand, within EX28DRAFT_1635 at 1653.223 kb on + strand, within EX28DRAFT_1635 at 1653.224 kb on - strand, within EX28DRAFT_1635 at 1653.225 kb on + strand, within EX28DRAFT_1635 at 1653.226 kb on - strand, within EX28DRAFT_1635 at 1653.346 kb on - strand at 1653.386 kb on - strand at 1653.816 kb on - strand, within EX28DRAFT_1636 at 1653.816 kb on - strand, within EX28DRAFT_1636 at 1653.880 kb on - strand, within EX28DRAFT_1636 at 1653.880 kb on - strand, within EX28DRAFT_1636 at 1653.923 kb on - strand, within EX28DRAFT_1636 at 1654.109 kb on + strand, within EX28DRAFT_1636 at 1654.112 kb on + strand, within EX28DRAFT_1636
Per-strain Table
Position Strand Gene LocusTag Fraction MS_media with m-arsenite 1 mM remove 1,652,132 - -2.0 1,652,132 - +0.2 1,652,188 - -0.6 1,652,188 - -0.1 1,652,244 + -0.5 1,652,244 + +1.5 1,653,012 + EX28DRAFT_1635 0.17 +1.0 1,653,048 + EX28DRAFT_1635 0.28 +0.4 1,653,048 + EX28DRAFT_1635 0.28 -0.8 1,653,048 + EX28DRAFT_1635 0.28 +0.5 1,653,061 + EX28DRAFT_1635 0.32 +0.6 1,653,062 - EX28DRAFT_1635 0.32 -1.1 1,653,118 - EX28DRAFT_1635 0.50 +0.3 1,653,183 + EX28DRAFT_1635 0.70 -2.6 1,653,223 + EX28DRAFT_1635 0.82 -0.4 1,653,224 - EX28DRAFT_1635 0.82 -0.1 1,653,225 + EX28DRAFT_1635 0.83 +0.8 1,653,226 - EX28DRAFT_1635 0.83 -2.2 1,653,346 - +0.5 1,653,386 - +0.7 1,653,816 - EX28DRAFT_1636 0.39 -0.7 1,653,816 - EX28DRAFT_1636 0.39 -0.8 1,653,880 - EX28DRAFT_1636 0.45 +0.5 1,653,880 - EX28DRAFT_1636 0.45 -0.2 1,653,923 - EX28DRAFT_1636 0.49 -1.0 1,654,109 + EX28DRAFT_1636 0.65 +0.2 1,654,112 + EX28DRAFT_1636 0.66 -0.2
Or see this region's nucleotide sequence