Strain Fitness in Enterobacter asburiae PDN3 around EX28DRAFT_1556

Experiment: MS_media with m-arsenite 1 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntEX28DRAFT_1555 and EX28DRAFT_1556 are separated by 64 nucleotidesEX28DRAFT_1556 and EX28DRAFT_1557 overlap by 1 nucleotides EX28DRAFT_1555: EX28DRAFT_1555 - Chaperone of endosialidase, at 1,570,566 to 1,571,966 _1555 EX28DRAFT_1556: EX28DRAFT_1556 - hypothetical protein, at 1,572,031 to 1,572,978 _1556 EX28DRAFT_1557: EX28DRAFT_1557 - Phage-related protein, tail component, at 1,572,978 to 1,576,196 _1557 Position (kb) 1572 1573Strain fitness (log2 ratio) -4 -3 -2 -1 0 1at 1571.037 kb on + strand, within EX28DRAFT_1555at 1571.038 kb on - strand, within EX28DRAFT_1555at 1571.076 kb on - strand, within EX28DRAFT_1555at 1571.120 kb on + strand, within EX28DRAFT_1555at 1571.156 kb on + strand, within EX28DRAFT_1555at 1571.389 kb on + strand, within EX28DRAFT_1555at 1571.389 kb on + strand, within EX28DRAFT_1555at 1571.390 kb on - strand, within EX28DRAFT_1555at 1571.413 kb on - strand, within EX28DRAFT_1555at 1571.417 kb on - strand, within EX28DRAFT_1555at 1571.424 kb on + strand, within EX28DRAFT_1555at 1571.424 kb on + strand, within EX28DRAFT_1555at 1571.424 kb on + strand, within EX28DRAFT_1555at 1571.424 kb on + strand, within EX28DRAFT_1555at 1571.424 kb on + strand, within EX28DRAFT_1555at 1571.430 kb on - strand, within EX28DRAFT_1555at 1571.449 kb on + strand, within EX28DRAFT_1555at 1571.449 kb on + strand, within EX28DRAFT_1555at 1571.449 kb on + strand, within EX28DRAFT_1555at 1571.457 kb on - strand, within EX28DRAFT_1555at 1571.483 kb on + strand, within EX28DRAFT_1555at 1571.501 kb on + strand, within EX28DRAFT_1555at 1571.511 kb on + strand, within EX28DRAFT_1555at 1571.511 kb on + strand, within EX28DRAFT_1555at 1571.511 kb on + strand, within EX28DRAFT_1555at 1571.553 kb on + strand, within EX28DRAFT_1555at 1571.554 kb on - strand, within EX28DRAFT_1555at 1571.571 kb on + strand, within EX28DRAFT_1555at 1571.729 kb on + strand, within EX28DRAFT_1555at 1571.729 kb on + strand, within EX28DRAFT_1555at 1571.843 kb on + strandat 1571.844 kb on - strandat 1571.949 kb on + strandat 1571.966 kb on + strandat 1571.967 kb on - strandat 1571.968 kb on + strandat 1571.968 kb on + strandat 1571.968 kb on + strandat 1571.969 kb on - strandat 1571.969 kb on - strandat 1571.979 kb on - strandat 1572.030 kb on - strandat 1572.030 kb on - strandat 1572.030 kb on - strandat 1572.030 kb on - strandat 1572.092 kb on + strandat 1572.093 kb on - strandat 1572.093 kb on - strandat 1572.289 kb on - strand, within EX28DRAFT_1556at 1572.397 kb on + strand, within EX28DRAFT_1556at 1572.398 kb on - strand, within EX28DRAFT_1556at 1572.398 kb on - strand, within EX28DRAFT_1556at 1572.426 kb on + strand, within EX28DRAFT_1556at 1572.428 kb on + strand, within EX28DRAFT_1556at 1572.428 kb on + strand, within EX28DRAFT_1556at 1572.447 kb on + strand, within EX28DRAFT_1556at 1572.447 kb on + strand, within EX28DRAFT_1556at 1572.450 kb on + strand, within EX28DRAFT_1556at 1572.524 kb on + strand, within EX28DRAFT_1556at 1572.524 kb on + strand, within EX28DRAFT_1556at 1572.528 kb on + strand, within EX28DRAFT_1556at 1572.535 kb on + strand, within EX28DRAFT_1556at 1572.536 kb on - strand, within EX28DRAFT_1556at 1572.681 kb on + strand, within EX28DRAFT_1556at 1572.681 kb on + strand, within EX28DRAFT_1556at 1572.844 kb on - strand, within EX28DRAFT_1556at 1572.883 kb on + strand, within EX28DRAFT_1556at 1572.960 kb on + strandat 1572.960 kb on + strandat 1572.962 kb on + strandat 1572.963 kb on - strandat 1572.963 kb on - strandat 1572.963 kb on - strandat 1572.963 kb on - strandat 1572.963 kb on - strandat 1573.037 kb on + strandat 1573.094 kb on - strandat 1573.118 kb on + strandat 1573.149 kb on - strandat 1573.149 kb on - strandat 1573.174 kb on + strandat 1573.174 kb on + strandat 1573.175 kb on - strandat 1573.175 kb on - strandat 1573.179 kb on - strandat 1573.338 kb on - strand, within EX28DRAFT_1557at 1573.343 kb on + strand, within EX28DRAFT_1557at 1573.396 kb on + strand, within EX28DRAFT_1557at 1573.397 kb on - strand, within EX28DRAFT_1557at 1573.397 kb on - strand, within EX28DRAFT_1557at 1573.435 kb on + strand, within EX28DRAFT_1557at 1573.436 kb on - strand, within EX28DRAFT_1557at 1573.436 kb on - strand, within EX28DRAFT_1557at 1573.436 kb on - strand, within EX28DRAFT_1557at 1573.562 kb on + strand, within EX28DRAFT_1557at 1573.594 kb on - strand, within EX28DRAFT_1557at 1573.616 kb on + strand, within EX28DRAFT_1557at 1573.616 kb on + strand, within EX28DRAFT_1557at 1573.616 kb on + strand, within EX28DRAFT_1557at 1573.616 kb on + strand, within EX28DRAFT_1557at 1573.616 kb on + strand, within EX28DRAFT_1557at 1573.617 kb on - strand, within EX28DRAFT_1557at 1573.617 kb on - strand, within EX28DRAFT_1557at 1573.617 kb on - strand, within EX28DRAFT_1557at 1573.728 kb on + strand, within EX28DRAFT_1557at 1573.785 kb on - strand, within EX28DRAFT_1557at 1573.865 kb on + strand, within EX28DRAFT_1557at 1573.867 kb on + strand, within EX28DRAFT_1557at 1573.868 kb on - strand, within EX28DRAFT_1557at 1573.887 kb on + strand, within EX28DRAFT_1557at 1573.888 kb on - strand, within EX28DRAFT_1557at 1573.933 kb on + strand, within EX28DRAFT_1557

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Per-strain Table

Position Strand Gene LocusTag Fraction MS_media with m-arsenite 1 mM
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1,571,037 + EX28DRAFT_1555 0.34 -1.3
1,571,038 - EX28DRAFT_1555 0.34 -0.3
1,571,076 - EX28DRAFT_1555 0.36 -0.3
1,571,120 + EX28DRAFT_1555 0.40 -0.2
1,571,156 + EX28DRAFT_1555 0.42 +1.3
1,571,389 + EX28DRAFT_1555 0.59 -3.9
1,571,389 + EX28DRAFT_1555 0.59 -0.1
1,571,390 - EX28DRAFT_1555 0.59 +0.6
1,571,413 - EX28DRAFT_1555 0.60 +0.3
1,571,417 - EX28DRAFT_1555 0.61 -1.4
1,571,424 + EX28DRAFT_1555 0.61 +0.9
1,571,424 + EX28DRAFT_1555 0.61 -0.6
1,571,424 + EX28DRAFT_1555 0.61 -0.1
1,571,424 + EX28DRAFT_1555 0.61 -0.7
1,571,424 + EX28DRAFT_1555 0.61 -0.1
1,571,430 - EX28DRAFT_1555 0.62 -0.4
1,571,449 + EX28DRAFT_1555 0.63 -0.0
1,571,449 + EX28DRAFT_1555 0.63 -3.9
1,571,449 + EX28DRAFT_1555 0.63 -0.6
1,571,457 - EX28DRAFT_1555 0.64 -0.9
1,571,483 + EX28DRAFT_1555 0.65 +0.6
1,571,501 + EX28DRAFT_1555 0.67 -3.1
1,571,511 + EX28DRAFT_1555 0.67 +0.0
1,571,511 + EX28DRAFT_1555 0.67 +0.1
1,571,511 + EX28DRAFT_1555 0.67 +1.3
1,571,553 + EX28DRAFT_1555 0.70 -0.1
1,571,554 - EX28DRAFT_1555 0.71 +0.4
1,571,571 + EX28DRAFT_1555 0.72 +0.5
1,571,729 + EX28DRAFT_1555 0.83 +0.3
1,571,729 + EX28DRAFT_1555 0.83 +0.5
1,571,843 + -0.6
1,571,844 - +0.3
1,571,949 + -2.8
1,571,966 + +0.1
1,571,967 - +0.4
1,571,968 + -0.5
1,571,968 + +0.8
1,571,968 + +1.0
1,571,969 - +1.1
1,571,969 - -0.6
1,571,979 - +0.5
1,572,030 - +0.3
1,572,030 - +0.3
1,572,030 - +0.2
1,572,030 - -0.0
1,572,092 + +0.1
1,572,093 - -0.7
1,572,093 - -0.4
1,572,289 - EX28DRAFT_1556 0.27 +1.7
1,572,397 + EX28DRAFT_1556 0.39 -0.7
1,572,398 - EX28DRAFT_1556 0.39 +1.7
1,572,398 - EX28DRAFT_1556 0.39 +0.9
1,572,426 + EX28DRAFT_1556 0.42 -0.1
1,572,428 + EX28DRAFT_1556 0.42 +1.4
1,572,428 + EX28DRAFT_1556 0.42 +1.0
1,572,447 + EX28DRAFT_1556 0.44 -1.3
1,572,447 + EX28DRAFT_1556 0.44 +0.3
1,572,450 + EX28DRAFT_1556 0.44 -0.2
1,572,524 + EX28DRAFT_1556 0.52 +1.2
1,572,524 + EX28DRAFT_1556 0.52 -0.1
1,572,528 + EX28DRAFT_1556 0.52 +0.1
1,572,535 + EX28DRAFT_1556 0.53 +0.1
1,572,536 - EX28DRAFT_1556 0.53 +1.2
1,572,681 + EX28DRAFT_1556 0.69 -0.6
1,572,681 + EX28DRAFT_1556 0.69 -0.8
1,572,844 - EX28DRAFT_1556 0.86 -0.0
1,572,883 + EX28DRAFT_1556 0.90 +0.6
1,572,960 + -0.0
1,572,960 + +0.9
1,572,962 + +0.8
1,572,963 - -0.3
1,572,963 - -0.6
1,572,963 - -1.8
1,572,963 - +1.3
1,572,963 - +0.1
1,573,037 + +0.5
1,573,094 - +1.0
1,573,118 + +0.9
1,573,149 - +1.1
1,573,149 - +0.9
1,573,174 + -2.5
1,573,174 + -3.7
1,573,175 - +0.4
1,573,175 - -0.3
1,573,179 - +0.9
1,573,338 - EX28DRAFT_1557 0.11 -0.0
1,573,343 + EX28DRAFT_1557 0.11 -0.6
1,573,396 + EX28DRAFT_1557 0.13 +0.0
1,573,397 - EX28DRAFT_1557 0.13 +0.4
1,573,397 - EX28DRAFT_1557 0.13 +0.8
1,573,435 + EX28DRAFT_1557 0.14 +0.1
1,573,436 - EX28DRAFT_1557 0.14 +1.3
1,573,436 - EX28DRAFT_1557 0.14 -0.3
1,573,436 - EX28DRAFT_1557 0.14 +0.1
1,573,562 + EX28DRAFT_1557 0.18 +0.3
1,573,594 - EX28DRAFT_1557 0.19 -1.9
1,573,616 + EX28DRAFT_1557 0.20 -0.5
1,573,616 + EX28DRAFT_1557 0.20 +0.1
1,573,616 + EX28DRAFT_1557 0.20 -2.0
1,573,616 + EX28DRAFT_1557 0.20 +0.8
1,573,616 + EX28DRAFT_1557 0.20 -0.1
1,573,617 - EX28DRAFT_1557 0.20 +0.1
1,573,617 - EX28DRAFT_1557 0.20 +0.3
1,573,617 - EX28DRAFT_1557 0.20 +0.8
1,573,728 + EX28DRAFT_1557 0.23 +1.1
1,573,785 - EX28DRAFT_1557 0.25 +0.9
1,573,865 + EX28DRAFT_1557 0.28 -0.3
1,573,867 + EX28DRAFT_1557 0.28 -3.8
1,573,868 - EX28DRAFT_1557 0.28 +0.4
1,573,887 + EX28DRAFT_1557 0.28 -2.3
1,573,888 - EX28DRAFT_1557 0.28 +0.9
1,573,933 + EX28DRAFT_1557 0.30 +0.9

Or see this region's nucleotide sequence