Experiment: MS_media with m-arsenite 1 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt EX28DRAFT_1502 and EX28DRAFT_1503 are separated by 24 nucleotides EX28DRAFT_1503 and EX28DRAFT_1504 are separated by 150 nucleotides
EX28DRAFT_1502: EX28DRAFT_1502 - Glycine/D-amino acid oxidases (deaminating), at 1,517,187 to 1,518,467
_1502
EX28DRAFT_1503: EX28DRAFT_1503 - 4-aminobutyrate aminotransferase, prokaryotic type, at 1,518,492 to 1,519,763
_1503
EX28DRAFT_1504: EX28DRAFT_1504 - Zn-dependent carboxypeptidase, at 1,519,914 to 1,521,401
_1504
Position (kb)
1518
1519
1520 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2 at 1517.526 kb on + strand, within EX28DRAFT_1502 at 1517.895 kb on + strand, within EX28DRAFT_1502 at 1517.896 kb on - strand, within EX28DRAFT_1502 at 1517.907 kb on - strand, within EX28DRAFT_1502 at 1518.009 kb on - strand, within EX28DRAFT_1502 at 1518.012 kb on + strand, within EX28DRAFT_1502 at 1518.012 kb on + strand, within EX28DRAFT_1502 at 1518.013 kb on - strand, within EX28DRAFT_1502 at 1518.033 kb on + strand, within EX28DRAFT_1502 at 1518.033 kb on + strand, within EX28DRAFT_1502 at 1518.045 kb on + strand, within EX28DRAFT_1502 at 1518.045 kb on + strand, within EX28DRAFT_1502 at 1518.078 kb on + strand, within EX28DRAFT_1502 at 1518.097 kb on - strand, within EX28DRAFT_1502 at 1518.224 kb on + strand, within EX28DRAFT_1502 at 1518.258 kb on + strand, within EX28DRAFT_1502 at 1518.258 kb on + strand, within EX28DRAFT_1502 at 1518.258 kb on + strand, within EX28DRAFT_1502 at 1518.259 kb on - strand, within EX28DRAFT_1502 at 1518.261 kb on + strand, within EX28DRAFT_1502 at 1518.262 kb on - strand, within EX28DRAFT_1502 at 1518.262 kb on - strand, within EX28DRAFT_1502 at 1518.262 kb on - strand, within EX28DRAFT_1502 at 1518.616 kb on - strand at 1518.618 kb on - strand at 1518.744 kb on + strand, within EX28DRAFT_1503 at 1518.915 kb on + strand, within EX28DRAFT_1503 at 1518.915 kb on + strand, within EX28DRAFT_1503 at 1518.915 kb on + strand, within EX28DRAFT_1503 at 1518.915 kb on + strand, within EX28DRAFT_1503 at 1518.916 kb on - strand, within EX28DRAFT_1503 at 1518.916 kb on - strand, within EX28DRAFT_1503 at 1518.917 kb on + strand, within EX28DRAFT_1503 at 1518.918 kb on - strand, within EX28DRAFT_1503 at 1518.954 kb on - strand, within EX28DRAFT_1503 at 1518.988 kb on - strand, within EX28DRAFT_1503 at 1519.381 kb on - strand, within EX28DRAFT_1503 at 1519.427 kb on + strand, within EX28DRAFT_1503 at 1519.427 kb on + strand, within EX28DRAFT_1503 at 1519.428 kb on - strand, within EX28DRAFT_1503 at 1519.428 kb on - strand, within EX28DRAFT_1503 at 1519.745 kb on + strand at 1519.762 kb on - strand at 1519.762 kb on - strand at 1519.762 kb on - strand at 1519.762 kb on - strand at 1519.824 kb on + strand at 1519.825 kb on - strand at 1519.873 kb on + strand at 1519.874 kb on - strand at 1520.662 kb on - strand, within EX28DRAFT_1504
Per-strain Table
Position Strand Gene LocusTag Fraction MS_media with m-arsenite 1 mM remove 1,517,526 + EX28DRAFT_1502 0.26 -0.8 1,517,895 + EX28DRAFT_1502 0.55 +0.3 1,517,896 - EX28DRAFT_1502 0.55 +0.2 1,517,907 - EX28DRAFT_1502 0.56 -1.3 1,518,009 - EX28DRAFT_1502 0.64 -0.8 1,518,012 + EX28DRAFT_1502 0.64 +1.0 1,518,012 + EX28DRAFT_1502 0.64 +0.2 1,518,013 - EX28DRAFT_1502 0.64 -0.7 1,518,033 + EX28DRAFT_1502 0.66 +0.8 1,518,033 + EX28DRAFT_1502 0.66 -0.6 1,518,045 + EX28DRAFT_1502 0.67 -0.0 1,518,045 + EX28DRAFT_1502 0.67 -0.1 1,518,078 + EX28DRAFT_1502 0.70 +0.9 1,518,097 - EX28DRAFT_1502 0.71 -0.3 1,518,224 + EX28DRAFT_1502 0.81 -0.4 1,518,258 + EX28DRAFT_1502 0.84 -2.7 1,518,258 + EX28DRAFT_1502 0.84 +0.2 1,518,258 + EX28DRAFT_1502 0.84 -1.4 1,518,259 - EX28DRAFT_1502 0.84 +0.0 1,518,261 + EX28DRAFT_1502 0.84 +0.3 1,518,262 - EX28DRAFT_1502 0.84 +0.1 1,518,262 - EX28DRAFT_1502 0.84 -0.4 1,518,262 - EX28DRAFT_1502 0.84 +1.3 1,518,616 - +0.0 1,518,618 - +0.5 1,518,744 + EX28DRAFT_1503 0.20 +1.5 1,518,915 + EX28DRAFT_1503 0.33 -0.3 1,518,915 + EX28DRAFT_1503 0.33 -0.0 1,518,915 + EX28DRAFT_1503 0.33 -1.4 1,518,915 + EX28DRAFT_1503 0.33 -0.2 1,518,916 - EX28DRAFT_1503 0.33 +0.3 1,518,916 - EX28DRAFT_1503 0.33 +1.1 1,518,917 + EX28DRAFT_1503 0.33 +1.9 1,518,918 - EX28DRAFT_1503 0.33 -2.4 1,518,954 - EX28DRAFT_1503 0.36 -0.3 1,518,988 - EX28DRAFT_1503 0.39 +0.2 1,519,381 - EX28DRAFT_1503 0.70 +0.4 1,519,427 + EX28DRAFT_1503 0.74 -0.4 1,519,427 + EX28DRAFT_1503 0.74 +1.0 1,519,428 - EX28DRAFT_1503 0.74 -0.1 1,519,428 - EX28DRAFT_1503 0.74 -2.5 1,519,745 + +0.5 1,519,762 - -0.7 1,519,762 - +0.5 1,519,762 - -0.1 1,519,762 - +0.3 1,519,824 + -3.0 1,519,825 - +0.6 1,519,873 + +0.4 1,519,874 - +1.2 1,520,662 - EX28DRAFT_1504 0.50 -0.8
Or see this region's nucleotide sequence