Strain Fitness in Enterobacter asburiae PDN3 around EX28DRAFT_1430

Experiment: MS_media with m-arsenite 1 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntEX28DRAFT_1429 and EX28DRAFT_1430 are separated by 0 nucleotidesEX28DRAFT_1430 and EX28DRAFT_1431 are separated by 7 nucleotidesEX28DRAFT_1431 and EX28DRAFT_1432 overlap by 4 nucleotides EX28DRAFT_1429: EX28DRAFT_1429 - AraC-type DNA-binding domain-containing proteins, at 1,440,677 to 1,441,585 _1429 EX28DRAFT_1430: EX28DRAFT_1430 - Uncharacterized protein conserved in bacteria, at 1,441,586 to 1,441,903 _1430 EX28DRAFT_1431: EX28DRAFT_1431 - YnbE-like lipoprotein, at 1,441,911 to 1,442,102 _1431 EX28DRAFT_1432: EX28DRAFT_1432 - Dicarboxylate transport, at 1,442,099 to 1,444,738 _1432 Position (kb) 1441 1442Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2at 1440.598 kb on - strandat 1440.598 kb on - strandat 1440.599 kb on + strandat 1440.600 kb on - strandat 1440.612 kb on - strandat 1440.612 kb on - strandat 1440.612 kb on - strandat 1440.612 kb on - strandat 1440.704 kb on + strandat 1440.727 kb on + strandat 1440.798 kb on - strand, within EX28DRAFT_1429at 1440.877 kb on + strand, within EX28DRAFT_1429at 1440.893 kb on + strand, within EX28DRAFT_1429at 1440.893 kb on + strand, within EX28DRAFT_1429at 1440.894 kb on - strand, within EX28DRAFT_1429at 1440.967 kb on + strand, within EX28DRAFT_1429at 1441.083 kb on + strand, within EX28DRAFT_1429at 1441.084 kb on - strand, within EX28DRAFT_1429at 1441.084 kb on - strand, within EX28DRAFT_1429at 1441.351 kb on + strand, within EX28DRAFT_1429at 1441.409 kb on + strand, within EX28DRAFT_1429at 1441.587 kb on + strandat 1441.588 kb on - strandat 1441.623 kb on + strand, within EX28DRAFT_1430at 1441.624 kb on - strand, within EX28DRAFT_1430at 1441.717 kb on - strand, within EX28DRAFT_1430at 1441.880 kb on + strandat 1441.892 kb on + strandat 1441.964 kb on + strand, within EX28DRAFT_1431at 1441.964 kb on + strand, within EX28DRAFT_1431at 1441.965 kb on - strand, within EX28DRAFT_1431at 1441.965 kb on - strand, within EX28DRAFT_1431at 1441.967 kb on + strand, within EX28DRAFT_1431at 1441.968 kb on - strand, within EX28DRAFT_1431at 1441.997 kb on + strand, within EX28DRAFT_1431at 1441.997 kb on + strand, within EX28DRAFT_1431at 1441.998 kb on - strand, within EX28DRAFT_1431at 1441.998 kb on - strand, within EX28DRAFT_1431at 1441.998 kb on - strand, within EX28DRAFT_1431at 1442.233 kb on + strandat 1442.236 kb on - strandat 1442.303 kb on + strandat 1442.358 kb on + strandat 1442.359 kb on - strandat 1442.392 kb on + strand, within EX28DRAFT_1432at 1442.393 kb on - strand, within EX28DRAFT_1432at 1442.395 kb on + strand, within EX28DRAFT_1432at 1442.473 kb on + strand, within EX28DRAFT_1432at 1442.473 kb on + strand, within EX28DRAFT_1432at 1442.581 kb on + strand, within EX28DRAFT_1432at 1442.581 kb on + strand, within EX28DRAFT_1432at 1442.581 kb on + strand, within EX28DRAFT_1432at 1442.582 kb on - strand, within EX28DRAFT_1432at 1442.582 kb on - strand, within EX28DRAFT_1432at 1442.582 kb on - strand, within EX28DRAFT_1432at 1442.582 kb on - strand, within EX28DRAFT_1432at 1442.582 kb on - strand, within EX28DRAFT_1432at 1442.707 kb on - strand, within EX28DRAFT_1432at 1442.707 kb on - strand, within EX28DRAFT_1432at 1442.766 kb on - strand, within EX28DRAFT_1432

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Per-strain Table

Position Strand Gene LocusTag Fraction MS_media with m-arsenite 1 mM
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1,440,598 - +0.1
1,440,598 - +0.4
1,440,599 + -0.6
1,440,600 - -0.2
1,440,612 - -2.0
1,440,612 - +0.0
1,440,612 - +0.5
1,440,612 - +0.3
1,440,704 + +0.5
1,440,727 + -0.0
1,440,798 - EX28DRAFT_1429 0.13 -0.7
1,440,877 + EX28DRAFT_1429 0.22 -0.1
1,440,893 + EX28DRAFT_1429 0.24 +2.4
1,440,893 + EX28DRAFT_1429 0.24 -0.5
1,440,894 - EX28DRAFT_1429 0.24 -2.3
1,440,967 + EX28DRAFT_1429 0.32 +0.7
1,441,083 + EX28DRAFT_1429 0.45 +0.5
1,441,084 - EX28DRAFT_1429 0.45 +0.1
1,441,084 - EX28DRAFT_1429 0.45 -0.2
1,441,351 + EX28DRAFT_1429 0.74 +0.7
1,441,409 + EX28DRAFT_1429 0.81 -0.6
1,441,587 + -0.5
1,441,588 - -0.6
1,441,623 + EX28DRAFT_1430 0.12 -1.6
1,441,624 - EX28DRAFT_1430 0.12 -0.6
1,441,717 - EX28DRAFT_1430 0.41 -1.4
1,441,880 + +1.1
1,441,892 + -4.4
1,441,964 + EX28DRAFT_1431 0.28 -0.4
1,441,964 + EX28DRAFT_1431 0.28 -0.9
1,441,965 - EX28DRAFT_1431 0.28 -0.8
1,441,965 - EX28DRAFT_1431 0.28 +0.1
1,441,967 + EX28DRAFT_1431 0.29 +1.2
1,441,968 - EX28DRAFT_1431 0.30 -0.0
1,441,997 + EX28DRAFT_1431 0.45 -0.3
1,441,997 + EX28DRAFT_1431 0.45 +1.2
1,441,998 - EX28DRAFT_1431 0.45 -0.2
1,441,998 - EX28DRAFT_1431 0.45 -1.1
1,441,998 - EX28DRAFT_1431 0.45 +0.4
1,442,233 + -0.3
1,442,236 - -1.9
1,442,303 + -1.0
1,442,358 + -0.6
1,442,359 - +0.5
1,442,392 + EX28DRAFT_1432 0.11 -1.4
1,442,393 - EX28DRAFT_1432 0.11 -3.2
1,442,395 + EX28DRAFT_1432 0.11 -0.5
1,442,473 + EX28DRAFT_1432 0.14 -0.0
1,442,473 + EX28DRAFT_1432 0.14 +0.7
1,442,581 + EX28DRAFT_1432 0.18 -0.2
1,442,581 + EX28DRAFT_1432 0.18 +0.8
1,442,581 + EX28DRAFT_1432 0.18 +1.9
1,442,582 - EX28DRAFT_1432 0.18 +0.0
1,442,582 - EX28DRAFT_1432 0.18 +0.1
1,442,582 - EX28DRAFT_1432 0.18 -0.0
1,442,582 - EX28DRAFT_1432 0.18 -0.0
1,442,582 - EX28DRAFT_1432 0.18 -1.4
1,442,707 - EX28DRAFT_1432 0.23 +0.5
1,442,707 - EX28DRAFT_1432 0.23 -1.7
1,442,766 - EX28DRAFT_1432 0.25 -0.1

Or see this region's nucleotide sequence