Experiment: MS_media with m-arsenite 1 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt EX28DRAFT_1424 and EX28DRAFT_1425 are separated by 9 nucleotides EX28DRAFT_1425 and EX28DRAFT_1426 are separated by 121 nucleotides EX28DRAFT_1426 and EX28DRAFT_1427 overlap by 4 nucleotides
EX28DRAFT_1424: EX28DRAFT_1424 - diguanylate cyclase (GGDEF) domain, at 1,435,285 to 1,436,391
_1424
EX28DRAFT_1425: EX28DRAFT_1425 - Transcriptional regulator containing an amidase domain and an AraC-type DNA-binding HTH domain, at 1,436,401 to 1,437,387
_1425
EX28DRAFT_1426: EX28DRAFT_1426 - Predicted hydrolases or acyltransferases (alpha/beta hydrolase superfamily), at 1,437,509 to 1,438,273
_1426
EX28DRAFT_1427: EX28DRAFT_1427 - Acyl carrier protein phosphodiesterase, at 1,438,270 to 1,438,884
_1427
Position (kb)
1436
1437
1438 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2
3
4 at 1435.428 kb on - strand, within EX28DRAFT_1424 at 1435.435 kb on - strand, within EX28DRAFT_1424 at 1435.614 kb on + strand, within EX28DRAFT_1424 at 1435.676 kb on + strand, within EX28DRAFT_1424 at 1435.791 kb on + strand, within EX28DRAFT_1424 at 1435.807 kb on - strand, within EX28DRAFT_1424 at 1435.841 kb on + strand, within EX28DRAFT_1424 at 1435.870 kb on - strand, within EX28DRAFT_1424 at 1436.007 kb on + strand, within EX28DRAFT_1424 at 1436.036 kb on - strand, within EX28DRAFT_1424 at 1436.381 kb on + strand at 1436.677 kb on - strand, within EX28DRAFT_1425 at 1436.847 kb on + strand, within EX28DRAFT_1425 at 1436.848 kb on - strand, within EX28DRAFT_1425 at 1436.961 kb on + strand, within EX28DRAFT_1425 at 1436.962 kb on - strand, within EX28DRAFT_1425 at 1436.966 kb on + strand, within EX28DRAFT_1425 at 1437.068 kb on + strand, within EX28DRAFT_1425 at 1437.068 kb on + strand, within EX28DRAFT_1425 at 1437.069 kb on - strand, within EX28DRAFT_1425 at 1437.272 kb on - strand, within EX28DRAFT_1425 at 1437.272 kb on - strand, within EX28DRAFT_1425 at 1437.443 kb on + strand at 1437.467 kb on + strand at 1437.498 kb on - strand at 1437.508 kb on + strand at 1437.587 kb on - strand, within EX28DRAFT_1426 at 1437.959 kb on + strand, within EX28DRAFT_1426 at 1437.992 kb on - strand, within EX28DRAFT_1426 at 1438.092 kb on - strand, within EX28DRAFT_1426 at 1438.175 kb on - strand, within EX28DRAFT_1426 at 1438.177 kb on + strand, within EX28DRAFT_1426 at 1438.178 kb on - strand, within EX28DRAFT_1426 at 1438.189 kb on + strand, within EX28DRAFT_1426 at 1438.189 kb on + strand, within EX28DRAFT_1426 at 1438.190 kb on - strand, within EX28DRAFT_1426 at 1438.190 kb on - strand, within EX28DRAFT_1426 at 1438.286 kb on + strand at 1438.287 kb on - strand at 1438.287 kb on - strand at 1438.287 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction MS_media with m-arsenite 1 mM remove 1,435,428 - EX28DRAFT_1424 0.13 -0.5 1,435,435 - EX28DRAFT_1424 0.14 -0.6 1,435,614 + EX28DRAFT_1424 0.30 +0.3 1,435,676 + EX28DRAFT_1424 0.35 +0.4 1,435,791 + EX28DRAFT_1424 0.46 -0.2 1,435,807 - EX28DRAFT_1424 0.47 -0.5 1,435,841 + EX28DRAFT_1424 0.50 -0.2 1,435,870 - EX28DRAFT_1424 0.53 +0.2 1,436,007 + EX28DRAFT_1424 0.65 -0.3 1,436,036 - EX28DRAFT_1424 0.68 +0.6 1,436,381 + -0.4 1,436,677 - EX28DRAFT_1425 0.28 +0.3 1,436,847 + EX28DRAFT_1425 0.45 +0.3 1,436,848 - EX28DRAFT_1425 0.45 +0.4 1,436,961 + EX28DRAFT_1425 0.57 +1.4 1,436,962 - EX28DRAFT_1425 0.57 +4.7 1,436,966 + EX28DRAFT_1425 0.57 +0.7 1,437,068 + EX28DRAFT_1425 0.68 -0.9 1,437,068 + EX28DRAFT_1425 0.68 +0.3 1,437,069 - EX28DRAFT_1425 0.68 -1.9 1,437,272 - EX28DRAFT_1425 0.88 +0.1 1,437,272 - EX28DRAFT_1425 0.88 -3.4 1,437,443 + -0.3 1,437,467 + -0.4 1,437,498 - +0.6 1,437,508 + -0.3 1,437,587 - EX28DRAFT_1426 0.10 +0.0 1,437,959 + EX28DRAFT_1426 0.59 -1.9 1,437,992 - EX28DRAFT_1426 0.63 -0.1 1,438,092 - EX28DRAFT_1426 0.76 +1.2 1,438,175 - EX28DRAFT_1426 0.87 -1.4 1,438,177 + EX28DRAFT_1426 0.87 -0.5 1,438,178 - EX28DRAFT_1426 0.87 +0.1 1,438,189 + EX28DRAFT_1426 0.89 -2.0 1,438,189 + EX28DRAFT_1426 0.89 +0.0 1,438,190 - EX28DRAFT_1426 0.89 -0.1 1,438,190 - EX28DRAFT_1426 0.89 -1.5 1,438,286 + -0.0 1,438,287 - +0.4 1,438,287 - +0.2 1,438,287 - +0.6
Or see this region's nucleotide sequence