Experiment: MS_media with m-arsenite 1 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt EX28DRAFT_1384 and EX28DRAFT_1385 are separated by 64 nucleotides EX28DRAFT_1385 and EX28DRAFT_1386 overlap by 4 nucleotides EX28DRAFT_1386 and EX28DRAFT_1387 are separated by 99 nucleotides
EX28DRAFT_1384: EX28DRAFT_1384 - Predicted ester cyclase, at 1,395,686 to 1,396,225
_1384
EX28DRAFT_1385: EX28DRAFT_1385 - Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases), at 1,396,290 to 1,397,009
_1385
EX28DRAFT_1386: EX28DRAFT_1386 - NADH:flavin oxidoreductases, Old Yellow Enzyme family, at 1,397,006 to 1,398,121
_1386
EX28DRAFT_1387: EX28DRAFT_1387 - Transcriptional regulator, at 1,398,221 to 1,399,132
_1387
Position (kb)
1397
1398
1399 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2 at 1396.115 kb on + strand, within EX28DRAFT_1384 at 1396.117 kb on + strand, within EX28DRAFT_1384 at 1396.188 kb on - strand at 1396.210 kb on - strand at 1396.217 kb on - strand at 1396.239 kb on - strand at 1396.243 kb on + strand at 1396.244 kb on - strand at 1396.246 kb on + strand at 1396.247 kb on - strand at 1396.247 kb on - strand at 1396.247 kb on - strand at 1396.316 kb on + strand at 1396.466 kb on - strand, within EX28DRAFT_1385 at 1396.661 kb on - strand, within EX28DRAFT_1385 at 1396.923 kb on - strand, within EX28DRAFT_1385 at 1396.989 kb on - strand at 1397.000 kb on + strand at 1397.001 kb on - strand at 1397.009 kb on + strand at 1397.032 kb on - strand at 1397.048 kb on - strand at 1397.048 kb on - strand at 1397.283 kb on - strand, within EX28DRAFT_1386 at 1397.410 kb on + strand, within EX28DRAFT_1386 at 1397.468 kb on + strand, within EX28DRAFT_1386 at 1397.960 kb on + strand, within EX28DRAFT_1386 at 1397.960 kb on + strand, within EX28DRAFT_1386 at 1397.961 kb on - strand, within EX28DRAFT_1386 at 1398.112 kb on + strand at 1398.113 kb on - strand at 1398.157 kb on - strand at 1398.157 kb on - strand at 1398.447 kb on + strand, within EX28DRAFT_1387 at 1398.536 kb on + strand, within EX28DRAFT_1387 at 1398.542 kb on - strand, within EX28DRAFT_1387 at 1398.736 kb on + strand, within EX28DRAFT_1387
Per-strain Table
Position Strand Gene LocusTag Fraction MS_media with m-arsenite 1 mM remove 1,396,115 + EX28DRAFT_1384 0.79 +2.2 1,396,117 + EX28DRAFT_1384 0.80 -0.2 1,396,188 - -0.9 1,396,210 - +0.9 1,396,217 - +0.1 1,396,239 - -1.7 1,396,243 + -0.7 1,396,244 - +0.2 1,396,246 + +0.1 1,396,247 - -2.7 1,396,247 - -0.6 1,396,247 - +0.1 1,396,316 + +0.0 1,396,466 - EX28DRAFT_1385 0.24 +1.3 1,396,661 - EX28DRAFT_1385 0.52 +0.6 1,396,923 - EX28DRAFT_1385 0.88 -3.1 1,396,989 - -0.4 1,397,000 + -0.4 1,397,001 - +0.2 1,397,009 + -1.2 1,397,032 - +0.1 1,397,048 - -0.4 1,397,048 - -0.1 1,397,283 - EX28DRAFT_1386 0.25 -0.4 1,397,410 + EX28DRAFT_1386 0.36 -1.6 1,397,468 + EX28DRAFT_1386 0.41 +0.5 1,397,960 + EX28DRAFT_1386 0.85 -0.3 1,397,960 + EX28DRAFT_1386 0.85 +1.3 1,397,961 - EX28DRAFT_1386 0.86 -3.6 1,398,112 + -1.1 1,398,113 - +0.4 1,398,157 - +1.8 1,398,157 - +0.6 1,398,447 + EX28DRAFT_1387 0.25 +0.5 1,398,536 + EX28DRAFT_1387 0.35 -0.6 1,398,542 - EX28DRAFT_1387 0.35 -0.7 1,398,736 + EX28DRAFT_1387 0.56 +0.4
Or see this region's nucleotide sequence