Strain Fitness in Enterobacter asburiae PDN3 around EX28DRAFT_1365

Experiment: MS_media with m-arsenite 1 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntEX28DRAFT_1364 and EX28DRAFT_1365 are separated by 5 nucleotidesEX28DRAFT_1365 and EX28DRAFT_1366 are separated by 95 nucleotidesEX28DRAFT_1366 and EX28DRAFT_1367 are separated by 4 nucleotidesEX28DRAFT_1367 and EX28DRAFT_1368 overlap by 4 nucleotides EX28DRAFT_1364: EX28DRAFT_1364 - Methionine synthase II (cobalamin-independent), at 1,382,175 to 1,383,203 _1364 EX28DRAFT_1365: EX28DRAFT_1365 - Transcriptional regulator, at 1,383,209 to 1,384,141 _1365 EX28DRAFT_1366: EX28DRAFT_1366 - Uncharacterized protein conserved in bacteria, at 1,384,237 to 1,384,671 _1366 EX28DRAFT_1367: EX28DRAFT_1367 - Uncharacterized protein conserved in bacteria, at 1,384,676 to 1,385,134 _1367 EX28DRAFT_1368: EX28DRAFT_1368 - Protein of unknown function (DUF3833), at 1,385,131 to 1,385,664 _1368 Position (kb) 1383 1384 1385Strain fitness (log2 ratio) -4 -3 -2 -1 0 1at 1382.393 kb on + strand, within EX28DRAFT_1364at 1382.394 kb on - strand, within EX28DRAFT_1364at 1382.610 kb on + strand, within EX28DRAFT_1364at 1382.613 kb on - strand, within EX28DRAFT_1364at 1382.613 kb on - strand, within EX28DRAFT_1364at 1382.674 kb on + strand, within EX28DRAFT_1364at 1382.921 kb on + strand, within EX28DRAFT_1364at 1382.921 kb on + strand, within EX28DRAFT_1364at 1382.982 kb on - strand, within EX28DRAFT_1364at 1383.059 kb on + strand, within EX28DRAFT_1364at 1383.249 kb on + strandat 1383.249 kb on + strandat 1383.250 kb on - strandat 1383.250 kb on - strandat 1383.300 kb on + strandat 1383.300 kb on + strandat 1383.301 kb on - strandat 1383.355 kb on + strand, within EX28DRAFT_1365at 1383.615 kb on + strand, within EX28DRAFT_1365at 1383.758 kb on + strand, within EX28DRAFT_1365at 1383.978 kb on + strand, within EX28DRAFT_1365at 1383.979 kb on - strand, within EX28DRAFT_1365at 1384.204 kb on + strandat 1384.471 kb on + strand, within EX28DRAFT_1366at 1384.617 kb on + strand, within EX28DRAFT_1366at 1384.618 kb on - strand, within EX28DRAFT_1366at 1384.636 kb on - strandat 1384.676 kb on - strandat 1384.686 kb on + strandat 1384.687 kb on - strandat 1384.843 kb on + strand, within EX28DRAFT_1367at 1385.090 kb on + strandat 1385.091 kb on - strandat 1385.099 kb on + strandat 1385.100 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction MS_media with m-arsenite 1 mM
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1,382,393 + EX28DRAFT_1364 0.21 -0.2
1,382,394 - EX28DRAFT_1364 0.21 -0.3
1,382,610 + EX28DRAFT_1364 0.42 -0.8
1,382,613 - EX28DRAFT_1364 0.43 -0.7
1,382,613 - EX28DRAFT_1364 0.43 -3.1
1,382,674 + EX28DRAFT_1364 0.48 +0.2
1,382,921 + EX28DRAFT_1364 0.72 -1.5
1,382,921 + EX28DRAFT_1364 0.72 -2.1
1,382,982 - EX28DRAFT_1364 0.78 -0.8
1,383,059 + EX28DRAFT_1364 0.86 -1.3
1,383,249 + -0.1
1,383,249 + +0.1
1,383,250 - -0.4
1,383,250 - -0.0
1,383,300 + -0.5
1,383,300 + -0.1
1,383,301 - -2.6
1,383,355 + EX28DRAFT_1365 0.16 -0.1
1,383,615 + EX28DRAFT_1365 0.44 -0.2
1,383,758 + EX28DRAFT_1365 0.59 +0.4
1,383,978 + EX28DRAFT_1365 0.82 -2.3
1,383,979 - EX28DRAFT_1365 0.83 -0.3
1,384,204 + +0.6
1,384,471 + EX28DRAFT_1366 0.54 -1.1
1,384,617 + EX28DRAFT_1366 0.87 +0.0
1,384,618 - EX28DRAFT_1366 0.88 +0.3
1,384,636 - -0.3
1,384,676 - -1.9
1,384,686 + +0.6
1,384,687 - -1.4
1,384,843 + EX28DRAFT_1367 0.36 +0.2
1,385,090 + -4.3
1,385,091 - +1.2
1,385,099 + +0.0
1,385,100 - +0.7

Or see this region's nucleotide sequence