Strain Fitness in Enterobacter asburiae PDN3 around EX28DRAFT_1363

Experiment: MS_media with m-arsenite 1 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntEX28DRAFT_1361 and EX28DRAFT_1362 are separated by 10 nucleotidesEX28DRAFT_1362 and EX28DRAFT_1363 are separated by 213 nucleotidesEX28DRAFT_1363 and EX28DRAFT_1364 are separated by 23 nucleotides EX28DRAFT_1361: EX28DRAFT_1361 - hypothetical protein, at 1,379,154 to 1,380,269 _1361 EX28DRAFT_1362: EX28DRAFT_1362 - hypothetical protein, at 1,380,280 to 1,380,963 _1362 EX28DRAFT_1363: EX28DRAFT_1363 - Domain of unknown function (DUF1852), at 1,381,177 to 1,382,151 _1363 EX28DRAFT_1364: EX28DRAFT_1364 - Methionine synthase II (cobalamin-independent), at 1,382,175 to 1,383,203 _1364 Position (kb) 1381 1382 1383Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2at 1380.207 kb on - strandat 1380.219 kb on + strandat 1380.257 kb on - strandat 1380.257 kb on - strandat 1380.275 kb on + strandat 1380.296 kb on + strandat 1380.352 kb on - strand, within EX28DRAFT_1362at 1380.352 kb on - strand, within EX28DRAFT_1362at 1380.461 kb on + strand, within EX28DRAFT_1362at 1380.484 kb on - strand, within EX28DRAFT_1362at 1380.489 kb on + strand, within EX28DRAFT_1362at 1380.510 kb on + strand, within EX28DRAFT_1362at 1380.510 kb on + strand, within EX28DRAFT_1362at 1380.546 kb on - strand, within EX28DRAFT_1362at 1380.608 kb on - strand, within EX28DRAFT_1362at 1380.647 kb on - strand, within EX28DRAFT_1362at 1380.726 kb on + strand, within EX28DRAFT_1362at 1380.749 kb on - strand, within EX28DRAFT_1362at 1380.749 kb on - strand, within EX28DRAFT_1362at 1380.767 kb on + strand, within EX28DRAFT_1362at 1380.785 kb on - strand, within EX28DRAFT_1362at 1380.813 kb on - strand, within EX28DRAFT_1362at 1380.831 kb on + strand, within EX28DRAFT_1362at 1380.831 kb on + strand, within EX28DRAFT_1362at 1380.832 kb on - strand, within EX28DRAFT_1362at 1380.832 kb on - strand, within EX28DRAFT_1362at 1380.882 kb on + strand, within EX28DRAFT_1362at 1380.898 kb on + strandat 1380.898 kb on + strandat 1380.918 kb on + strandat 1380.918 kb on + strandat 1380.951 kb on + strandat 1381.044 kb on - strandat 1381.128 kb on + strandat 1381.195 kb on + strandat 1381.196 kb on - strandat 1381.196 kb on - strandat 1381.196 kb on - strandat 1381.196 kb on - strandat 1381.197 kb on + strandat 1381.197 kb on + strandat 1381.197 kb on + strandat 1381.228 kb on + strandat 1381.228 kb on + strandat 1381.311 kb on + strand, within EX28DRAFT_1363at 1381.513 kb on - strand, within EX28DRAFT_1363at 1381.525 kb on + strand, within EX28DRAFT_1363at 1381.789 kb on + strand, within EX28DRAFT_1363at 1381.985 kb on - strand, within EX28DRAFT_1363at 1382.036 kb on - strand, within EX28DRAFT_1363at 1382.092 kb on + strandat 1382.093 kb on - strandat 1382.140 kb on + strandat 1382.140 kb on + strandat 1382.141 kb on - strandat 1382.141 kb on - strandat 1382.141 kb on - strandat 1382.141 kb on - strandat 1382.150 kb on - strandat 1382.171 kb on + strandat 1382.171 kb on + strandat 1382.171 kb on + strandat 1382.172 kb on - strandat 1382.393 kb on + strand, within EX28DRAFT_1364at 1382.394 kb on - strand, within EX28DRAFT_1364at 1382.610 kb on + strand, within EX28DRAFT_1364at 1382.613 kb on - strand, within EX28DRAFT_1364at 1382.613 kb on - strand, within EX28DRAFT_1364at 1382.674 kb on + strand, within EX28DRAFT_1364at 1382.921 kb on + strand, within EX28DRAFT_1364at 1382.921 kb on + strand, within EX28DRAFT_1364at 1382.982 kb on - strand, within EX28DRAFT_1364at 1383.059 kb on + strand, within EX28DRAFT_1364

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Per-strain Table

Position Strand Gene LocusTag Fraction MS_media with m-arsenite 1 mM
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1,380,207 - -0.2
1,380,219 + +0.4
1,380,257 - -2.3
1,380,257 - -0.1
1,380,275 + +0.4
1,380,296 + +0.5
1,380,352 - EX28DRAFT_1362 0.11 +0.9
1,380,352 - EX28DRAFT_1362 0.11 -0.8
1,380,461 + EX28DRAFT_1362 0.26 +1.4
1,380,484 - EX28DRAFT_1362 0.30 -0.4
1,380,489 + EX28DRAFT_1362 0.31 -0.4
1,380,510 + EX28DRAFT_1362 0.34 -1.2
1,380,510 + EX28DRAFT_1362 0.34 +1.6
1,380,546 - EX28DRAFT_1362 0.39 -0.7
1,380,608 - EX28DRAFT_1362 0.48 +1.8
1,380,647 - EX28DRAFT_1362 0.54 -0.4
1,380,726 + EX28DRAFT_1362 0.65 -0.9
1,380,749 - EX28DRAFT_1362 0.69 -1.3
1,380,749 - EX28DRAFT_1362 0.69 -0.4
1,380,767 + EX28DRAFT_1362 0.71 -0.6
1,380,785 - EX28DRAFT_1362 0.74 +0.1
1,380,813 - EX28DRAFT_1362 0.78 -0.2
1,380,831 + EX28DRAFT_1362 0.81 -3.2
1,380,831 + EX28DRAFT_1362 0.81 +0.8
1,380,832 - EX28DRAFT_1362 0.81 +0.6
1,380,832 - EX28DRAFT_1362 0.81 -1.0
1,380,882 + EX28DRAFT_1362 0.88 -0.1
1,380,898 + -0.3
1,380,898 + +0.4
1,380,918 + -0.3
1,380,918 + +1.2
1,380,951 + -1.0
1,381,044 - -0.4
1,381,128 + -2.3
1,381,195 + -1.0
1,381,196 - -1.6
1,381,196 - -1.8
1,381,196 - -1.8
1,381,196 - -1.3
1,381,197 + -1.8
1,381,197 + -0.0
1,381,197 + -2.8
1,381,228 + -4.0
1,381,228 + -2.0
1,381,311 + EX28DRAFT_1363 0.14 -1.4
1,381,513 - EX28DRAFT_1363 0.34 -1.5
1,381,525 + EX28DRAFT_1363 0.36 -1.0
1,381,789 + EX28DRAFT_1363 0.63 -4.4
1,381,985 - EX28DRAFT_1363 0.83 -2.2
1,382,036 - EX28DRAFT_1363 0.88 +0.2
1,382,092 + -1.3
1,382,093 - -0.3
1,382,140 + +0.5
1,382,140 + -1.1
1,382,141 - -1.1
1,382,141 - -1.1
1,382,141 - -1.6
1,382,141 - -0.5
1,382,150 - -0.1
1,382,171 + -1.1
1,382,171 + -3.4
1,382,171 + -1.1
1,382,172 - -0.9
1,382,393 + EX28DRAFT_1364 0.21 -0.2
1,382,394 - EX28DRAFT_1364 0.21 -0.3
1,382,610 + EX28DRAFT_1364 0.42 -0.8
1,382,613 - EX28DRAFT_1364 0.43 -0.7
1,382,613 - EX28DRAFT_1364 0.43 -3.1
1,382,674 + EX28DRAFT_1364 0.48 +0.2
1,382,921 + EX28DRAFT_1364 0.72 -1.5
1,382,921 + EX28DRAFT_1364 0.72 -2.1
1,382,982 - EX28DRAFT_1364 0.78 -0.8
1,383,059 + EX28DRAFT_1364 0.86 -1.3

Or see this region's nucleotide sequence