Experiment: MS_media with m-arsenite 1 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt EX28DRAFT_1248 and EX28DRAFT_1249 are separated by 17 nucleotides EX28DRAFT_1249 and EX28DRAFT_1250 are separated by 11 nucleotides EX28DRAFT_1250 and EX28DRAFT_1251 are separated by 9 nucleotides EX28DRAFT_1251 and EX28DRAFT_1252 are separated by 132 nucleotides
EX28DRAFT_1248: EX28DRAFT_1248 - Short-chain dehydrogenases of various substrate specificities, at 1,265,872 to 1,266,852
_1248
EX28DRAFT_1249: EX28DRAFT_1249 - amidohydrolase, PncC family, at 1,266,870 to 1,267,388
_1249
EX28DRAFT_1250: EX28DRAFT_1250 - Protein of unknown function (DUF421), at 1,267,400 to 1,267,846
_1250
EX28DRAFT_1251: EX28DRAFT_1251 - hypothetical protein, at 1,267,856 to 1,268,365
_1251
EX28DRAFT_1252: EX28DRAFT_1252 - TIGR00156 family protein, at 1,268,498 to 1,268,887
_1252
Position (kb) 1267
1268 Strain fitness (log2 ratio) -3
-2
-1
0
1 at 1266.483 kb on + strand, within EX28DRAFT_1248 at 1266.524 kb on + strand, within EX28DRAFT_1248 at 1266.561 kb on + strand, within EX28DRAFT_1248 at 1266.853 kb on - strand at 1266.853 kb on - strand at 1266.853 kb on - strand at 1266.865 kb on + strand at 1266.866 kb on - strand at 1266.866 kb on - strand at 1267.359 kb on - strand at 1267.456 kb on + strand, within EX28DRAFT_1250 at 1267.815 kb on + strand at 1267.820 kb on - strand at 1267.867 kb on + strand at 1267.990 kb on - strand, within EX28DRAFT_1251 at 1268.023 kb on + strand, within EX28DRAFT_1251 at 1268.024 kb on - strand, within EX28DRAFT_1251 at 1268.024 kb on - strand, within EX28DRAFT_1251 at 1268.094 kb on + strand, within EX28DRAFT_1251 at 1268.094 kb on + strand, within EX28DRAFT_1251 at 1268.094 kb on + strand, within EX28DRAFT_1251 at 1268.094 kb on + strand, within EX28DRAFT_1251 at 1268.095 kb on - strand, within EX28DRAFT_1251 at 1268.095 kb on - strand, within EX28DRAFT_1251 at 1268.095 kb on - strand, within EX28DRAFT_1251 at 1268.095 kb on - strand, within EX28DRAFT_1251 at 1268.166 kb on + strand, within EX28DRAFT_1251 at 1268.167 kb on - strand, within EX28DRAFT_1251 at 1268.171 kb on + strand, within EX28DRAFT_1251 at 1268.172 kb on - strand, within EX28DRAFT_1251 at 1268.272 kb on + strand, within EX28DRAFT_1251 at 1268.442 kb on + strand at 1268.466 kb on + strand at 1268.781 kb on + strand, within EX28DRAFT_1252
Per-strain Table
Position Strand Gene LocusTag Fraction MS_media with m-arsenite 1 mM remove 1,266,483 + EX28DRAFT_1248 0.62 +1.0 1,266,524 + EX28DRAFT_1248 0.66 +0.0 1,266,561 + EX28DRAFT_1248 0.70 -0.8 1,266,853 - -0.2 1,266,853 - -0.6 1,266,853 - +0.6 1,266,865 + -1.5 1,266,866 - -0.4 1,266,866 - -0.9 1,267,359 - -0.0 1,267,456 + EX28DRAFT_1250 0.13 -0.8 1,267,815 + -0.1 1,267,820 - +0.3 1,267,867 + -2.4 1,267,990 - EX28DRAFT_1251 0.26 +1.5 1,268,023 + EX28DRAFT_1251 0.33 +0.4 1,268,024 - EX28DRAFT_1251 0.33 +0.6 1,268,024 - EX28DRAFT_1251 0.33 -0.0 1,268,094 + EX28DRAFT_1251 0.47 -0.4 1,268,094 + EX28DRAFT_1251 0.47 -2.4 1,268,094 + EX28DRAFT_1251 0.47 +0.3 1,268,094 + EX28DRAFT_1251 0.47 -0.5 1,268,095 - EX28DRAFT_1251 0.47 -0.1 1,268,095 - EX28DRAFT_1251 0.47 +0.7 1,268,095 - EX28DRAFT_1251 0.47 -1.1 1,268,095 - EX28DRAFT_1251 0.47 -0.4 1,268,166 + EX28DRAFT_1251 0.61 -2.9 1,268,167 - EX28DRAFT_1251 0.61 -0.5 1,268,171 + EX28DRAFT_1251 0.62 -0.6 1,268,172 - EX28DRAFT_1251 0.62 +0.6 1,268,272 + EX28DRAFT_1251 0.82 -0.1 1,268,442 + -0.1 1,268,466 + -0.4 1,268,781 + EX28DRAFT_1252 0.73 +0.1
Or see this region's nucleotide sequence