Experiment: MS_media with m-arsenite 1 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt EX28DRAFT_1238 and EX28DRAFT_1239 are separated by 236 nucleotides EX28DRAFT_1239 and EX28DRAFT_1240 are separated by 102 nucleotides EX28DRAFT_1240 and EX28DRAFT_1241 are separated by 94 nucleotides EX28DRAFT_1241 and EX28DRAFT_1242 are separated by 23 nucleotides
EX28DRAFT_1238: EX28DRAFT_1238 - Uncharacterized protein conserved in bacteria, at 1,257,459 to 1,258,802
_1238
EX28DRAFT_1239: EX28DRAFT_1239 - hypothetical protein, at 1,259,039 to 1,259,227
_1239
EX28DRAFT_1240: EX28DRAFT_1240 - Stress-induced bacterial acidophilic repeat motif, at 1,259,330 to 1,259,515
_1240
EX28DRAFT_1241: EX28DRAFT_1241 - Uncharacterized protein conserved in bacteria, at 1,259,610 to 1,260,103
_1241
EX28DRAFT_1242: EX28DRAFT_1242 - hypothetical protein, at 1,260,127 to 1,260,330
_1242
Position (kb)
1259
1260 Strain fitness (log2 ratio)
-4
-3
-2
-1
0
1
2 at 1258.078 kb on + strand, within EX28DRAFT_1238 at 1258.079 kb on - strand, within EX28DRAFT_1238 at 1258.079 kb on - strand, within EX28DRAFT_1238 at 1258.140 kb on - strand, within EX28DRAFT_1238 at 1258.201 kb on + strand, within EX28DRAFT_1238 at 1258.201 kb on + strand, within EX28DRAFT_1238 at 1258.287 kb on - strand, within EX28DRAFT_1238 at 1258.513 kb on + strand, within EX28DRAFT_1238 at 1258.514 kb on - strand, within EX28DRAFT_1238 at 1258.514 kb on - strand, within EX28DRAFT_1238 at 1258.514 kb on - strand, within EX28DRAFT_1238 at 1258.516 kb on + strand, within EX28DRAFT_1238 at 1258.516 kb on + strand, within EX28DRAFT_1238 at 1258.550 kb on + strand, within EX28DRAFT_1238 at 1258.550 kb on + strand, within EX28DRAFT_1238 at 1258.654 kb on - strand, within EX28DRAFT_1238 at 1258.654 kb on - strand, within EX28DRAFT_1238 at 1258.656 kb on + strand, within EX28DRAFT_1238 at 1258.656 kb on + strand, within EX28DRAFT_1238 at 1258.656 kb on + strand, within EX28DRAFT_1238 at 1258.657 kb on - strand, within EX28DRAFT_1238 at 1258.664 kb on + strand, within EX28DRAFT_1238 at 1258.665 kb on - strand, within EX28DRAFT_1238 at 1258.665 kb on - strand, within EX28DRAFT_1238 at 1258.686 kb on + strand at 1258.687 kb on - strand at 1258.687 kb on - strand at 1258.687 kb on - strand at 1258.718 kb on - strand at 1258.738 kb on + strand at 1258.738 kb on + strand at 1258.752 kb on - strand at 1258.752 kb on - strand at 1258.824 kb on - strand at 1258.826 kb on + strand at 1259.153 kb on - strand, within EX28DRAFT_1239 at 1259.294 kb on + strand at 1259.309 kb on + strand at 1259.309 kb on + strand at 1259.312 kb on - strand at 1259.587 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction MS_media with m-arsenite 1 mM remove 1,258,078 + EX28DRAFT_1238 0.46 -0.1 1,258,079 - EX28DRAFT_1238 0.46 -0.2 1,258,079 - EX28DRAFT_1238 0.46 -1.7 1,258,140 - EX28DRAFT_1238 0.51 -1.2 1,258,201 + EX28DRAFT_1238 0.55 +0.5 1,258,201 + EX28DRAFT_1238 0.55 -1.4 1,258,287 - EX28DRAFT_1238 0.62 -0.7 1,258,513 + EX28DRAFT_1238 0.78 +0.1 1,258,514 - EX28DRAFT_1238 0.78 -1.4 1,258,514 - EX28DRAFT_1238 0.78 -0.4 1,258,514 - EX28DRAFT_1238 0.78 +1.0 1,258,516 + EX28DRAFT_1238 0.79 +0.5 1,258,516 + EX28DRAFT_1238 0.79 -0.3 1,258,550 + EX28DRAFT_1238 0.81 -2.1 1,258,550 + EX28DRAFT_1238 0.81 -3.9 1,258,654 - EX28DRAFT_1238 0.89 -0.3 1,258,654 - EX28DRAFT_1238 0.89 +0.3 1,258,656 + EX28DRAFT_1238 0.89 -0.5 1,258,656 + EX28DRAFT_1238 0.89 +0.3 1,258,656 + EX28DRAFT_1238 0.89 -1.0 1,258,657 - EX28DRAFT_1238 0.89 -0.9 1,258,664 + EX28DRAFT_1238 0.90 +0.3 1,258,665 - EX28DRAFT_1238 0.90 +0.7 1,258,665 - EX28DRAFT_1238 0.90 +0.8 1,258,686 + +1.3 1,258,687 - +2.0 1,258,687 - +1.6 1,258,687 - +0.4 1,258,718 - +0.8 1,258,738 + -0.5 1,258,738 + -0.0 1,258,752 - +0.1 1,258,752 - +0.1 1,258,824 - +1.5 1,258,826 + -0.9 1,259,153 - EX28DRAFT_1239 0.60 +1.5 1,259,294 + -0.4 1,259,309 + -3.7 1,259,309 + +0.2 1,259,312 - -0.9 1,259,587 + -0.7
Or see this region's nucleotide sequence