Strain Fitness in Enterobacter asburiae PDN3 around EX28DRAFT_1239

Experiment: MS_media with m-arsenite 1 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntEX28DRAFT_1238 and EX28DRAFT_1239 are separated by 236 nucleotidesEX28DRAFT_1239 and EX28DRAFT_1240 are separated by 102 nucleotidesEX28DRAFT_1240 and EX28DRAFT_1241 are separated by 94 nucleotidesEX28DRAFT_1241 and EX28DRAFT_1242 are separated by 23 nucleotides EX28DRAFT_1238: EX28DRAFT_1238 - Uncharacterized protein conserved in bacteria, at 1,257,459 to 1,258,802 _1238 EX28DRAFT_1239: EX28DRAFT_1239 - hypothetical protein, at 1,259,039 to 1,259,227 _1239 EX28DRAFT_1240: EX28DRAFT_1240 - Stress-induced bacterial acidophilic repeat motif, at 1,259,330 to 1,259,515 _1240 EX28DRAFT_1241: EX28DRAFT_1241 - Uncharacterized protein conserved in bacteria, at 1,259,610 to 1,260,103 _1241 EX28DRAFT_1242: EX28DRAFT_1242 - hypothetical protein, at 1,260,127 to 1,260,330 _1242 Position (kb) 1259 1260Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2at 1258.078 kb on + strand, within EX28DRAFT_1238at 1258.079 kb on - strand, within EX28DRAFT_1238at 1258.079 kb on - strand, within EX28DRAFT_1238at 1258.140 kb on - strand, within EX28DRAFT_1238at 1258.201 kb on + strand, within EX28DRAFT_1238at 1258.201 kb on + strand, within EX28DRAFT_1238at 1258.287 kb on - strand, within EX28DRAFT_1238at 1258.513 kb on + strand, within EX28DRAFT_1238at 1258.514 kb on - strand, within EX28DRAFT_1238at 1258.514 kb on - strand, within EX28DRAFT_1238at 1258.514 kb on - strand, within EX28DRAFT_1238at 1258.516 kb on + strand, within EX28DRAFT_1238at 1258.516 kb on + strand, within EX28DRAFT_1238at 1258.550 kb on + strand, within EX28DRAFT_1238at 1258.550 kb on + strand, within EX28DRAFT_1238at 1258.654 kb on - strand, within EX28DRAFT_1238at 1258.654 kb on - strand, within EX28DRAFT_1238at 1258.656 kb on + strand, within EX28DRAFT_1238at 1258.656 kb on + strand, within EX28DRAFT_1238at 1258.656 kb on + strand, within EX28DRAFT_1238at 1258.657 kb on - strand, within EX28DRAFT_1238at 1258.664 kb on + strand, within EX28DRAFT_1238at 1258.665 kb on - strand, within EX28DRAFT_1238at 1258.665 kb on - strand, within EX28DRAFT_1238at 1258.686 kb on + strandat 1258.687 kb on - strandat 1258.687 kb on - strandat 1258.687 kb on - strandat 1258.718 kb on - strandat 1258.738 kb on + strandat 1258.738 kb on + strandat 1258.752 kb on - strandat 1258.752 kb on - strandat 1258.824 kb on - strandat 1258.826 kb on + strandat 1259.153 kb on - strand, within EX28DRAFT_1239at 1259.294 kb on + strandat 1259.309 kb on + strandat 1259.309 kb on + strandat 1259.312 kb on - strandat 1259.587 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction MS_media with m-arsenite 1 mM
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1,258,078 + EX28DRAFT_1238 0.46 -0.1
1,258,079 - EX28DRAFT_1238 0.46 -0.2
1,258,079 - EX28DRAFT_1238 0.46 -1.7
1,258,140 - EX28DRAFT_1238 0.51 -1.2
1,258,201 + EX28DRAFT_1238 0.55 +0.5
1,258,201 + EX28DRAFT_1238 0.55 -1.4
1,258,287 - EX28DRAFT_1238 0.62 -0.7
1,258,513 + EX28DRAFT_1238 0.78 +0.1
1,258,514 - EX28DRAFT_1238 0.78 -1.4
1,258,514 - EX28DRAFT_1238 0.78 -0.4
1,258,514 - EX28DRAFT_1238 0.78 +1.0
1,258,516 + EX28DRAFT_1238 0.79 +0.5
1,258,516 + EX28DRAFT_1238 0.79 -0.3
1,258,550 + EX28DRAFT_1238 0.81 -2.1
1,258,550 + EX28DRAFT_1238 0.81 -3.9
1,258,654 - EX28DRAFT_1238 0.89 -0.3
1,258,654 - EX28DRAFT_1238 0.89 +0.3
1,258,656 + EX28DRAFT_1238 0.89 -0.5
1,258,656 + EX28DRAFT_1238 0.89 +0.3
1,258,656 + EX28DRAFT_1238 0.89 -1.0
1,258,657 - EX28DRAFT_1238 0.89 -0.9
1,258,664 + EX28DRAFT_1238 0.90 +0.3
1,258,665 - EX28DRAFT_1238 0.90 +0.7
1,258,665 - EX28DRAFT_1238 0.90 +0.8
1,258,686 + +1.3
1,258,687 - +2.0
1,258,687 - +1.6
1,258,687 - +0.4
1,258,718 - +0.8
1,258,738 + -0.5
1,258,738 + -0.0
1,258,752 - +0.1
1,258,752 - +0.1
1,258,824 - +1.5
1,258,826 + -0.9
1,259,153 - EX28DRAFT_1239 0.60 +1.5
1,259,294 + -0.4
1,259,309 + -3.7
1,259,309 + +0.2
1,259,312 - -0.9
1,259,587 + -0.7

Or see this region's nucleotide sequence