Experiment: MS_media with m-arsenite 1 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt EX28DRAFT_1231 and EX28DRAFT_1232 overlap by 6 nucleotides EX28DRAFT_1232 and EX28DRAFT_1233 are separated by 45 nucleotides
EX28DRAFT_1231: EX28DRAFT_1231 - Bacterial transferase hexapeptide (six repeats), at 1,249,534 to 1,250,514
_1231
EX28DRAFT_1232: EX28DRAFT_1232 - Acetyltransferases, including N-acetylases of ribosomal proteins, at 1,250,509 to 1,251,057
_1232
EX28DRAFT_1233: EX28DRAFT_1233 - Periplasmic glucans biosynthesis protein, at 1,251,103 to 1,252,758
_1233
Position (kb)
1250
1251
1252 Strain fitness (log2 ratio)
-4
-3
-2
-1
0
1
2 at 1249.509 kb on + strand at 1249.510 kb on - strand at 1249.529 kb on + strand at 1249.594 kb on - strand at 1249.807 kb on - strand, within EX28DRAFT_1231 at 1249.997 kb on - strand, within EX28DRAFT_1231 at 1250.129 kb on + strand, within EX28DRAFT_1231 at 1250.129 kb on + strand, within EX28DRAFT_1231 at 1250.129 kb on + strand, within EX28DRAFT_1231 at 1250.130 kb on - strand, within EX28DRAFT_1231 at 1250.133 kb on + strand, within EX28DRAFT_1231 at 1250.133 kb on + strand, within EX28DRAFT_1231 at 1250.134 kb on - strand, within EX28DRAFT_1231 at 1250.164 kb on + strand, within EX28DRAFT_1231 at 1250.165 kb on - strand, within EX28DRAFT_1231 at 1250.512 kb on + strand at 1250.513 kb on - strand at 1250.513 kb on - strand at 1250.684 kb on + strand, within EX28DRAFT_1232 at 1250.684 kb on + strand, within EX28DRAFT_1232 at 1250.685 kb on - strand, within EX28DRAFT_1232 at 1250.687 kb on + strand, within EX28DRAFT_1232 at 1250.687 kb on + strand, within EX28DRAFT_1232 at 1250.803 kb on + strand, within EX28DRAFT_1232 at 1250.804 kb on - strand, within EX28DRAFT_1232 at 1250.826 kb on + strand, within EX28DRAFT_1232 at 1250.827 kb on - strand, within EX28DRAFT_1232 at 1250.827 kb on - strand, within EX28DRAFT_1232 at 1250.830 kb on + strand, within EX28DRAFT_1232 at 1250.971 kb on - strand, within EX28DRAFT_1232 at 1251.128 kb on + strand at 1251.129 kb on - strand at 1251.129 kb on - strand at 1251.133 kb on - strand at 1251.133 kb on - strand at 1251.291 kb on - strand, within EX28DRAFT_1233 at 1251.330 kb on + strand, within EX28DRAFT_1233 at 1251.521 kb on + strand, within EX28DRAFT_1233 at 1251.530 kb on + strand, within EX28DRAFT_1233 at 1251.531 kb on - strand, within EX28DRAFT_1233 at 1251.534 kb on + strand, within EX28DRAFT_1233 at 1251.535 kb on - strand, within EX28DRAFT_1233 at 1251.535 kb on - strand, within EX28DRAFT_1233 at 1251.690 kb on + strand, within EX28DRAFT_1233 at 1251.690 kb on + strand, within EX28DRAFT_1233 at 1251.692 kb on + strand, within EX28DRAFT_1233 at 1251.713 kb on + strand, within EX28DRAFT_1233 at 1251.765 kb on + strand, within EX28DRAFT_1233 at 1251.771 kb on + strand, within EX28DRAFT_1233 at 1251.772 kb on - strand, within EX28DRAFT_1233 at 1251.773 kb on + strand, within EX28DRAFT_1233 at 1251.774 kb on - strand, within EX28DRAFT_1233 at 1251.774 kb on - strand, within EX28DRAFT_1233 at 1251.921 kb on + strand, within EX28DRAFT_1233 at 1251.969 kb on - strand, within EX28DRAFT_1233 at 1252.026 kb on + strand, within EX28DRAFT_1233
Per-strain Table
Position Strand Gene LocusTag Fraction MS_media with m-arsenite 1 mM remove 1,249,509 + +0.5 1,249,510 - +1.3 1,249,529 + -1.0 1,249,594 - -0.7 1,249,807 - EX28DRAFT_1231 0.28 -2.6 1,249,997 - EX28DRAFT_1231 0.47 -1.2 1,250,129 + EX28DRAFT_1231 0.61 +0.7 1,250,129 + EX28DRAFT_1231 0.61 -0.2 1,250,129 + EX28DRAFT_1231 0.61 +0.4 1,250,130 - EX28DRAFT_1231 0.61 -0.1 1,250,133 + EX28DRAFT_1231 0.61 -0.4 1,250,133 + EX28DRAFT_1231 0.61 +0.3 1,250,134 - EX28DRAFT_1231 0.61 +0.5 1,250,164 + EX28DRAFT_1231 0.64 +0.5 1,250,165 - EX28DRAFT_1231 0.64 +0.2 1,250,512 + -0.5 1,250,513 - -0.2 1,250,513 - +0.1 1,250,684 + EX28DRAFT_1232 0.32 +0.2 1,250,684 + EX28DRAFT_1232 0.32 -0.4 1,250,685 - EX28DRAFT_1232 0.32 -0.3 1,250,687 + EX28DRAFT_1232 0.32 +0.2 1,250,687 + EX28DRAFT_1232 0.32 +0.2 1,250,803 + EX28DRAFT_1232 0.54 -2.7 1,250,804 - EX28DRAFT_1232 0.54 -0.2 1,250,826 + EX28DRAFT_1232 0.58 +0.9 1,250,827 - EX28DRAFT_1232 0.58 -1.2 1,250,827 - EX28DRAFT_1232 0.58 -3.4 1,250,830 + EX28DRAFT_1232 0.58 +0.5 1,250,971 - EX28DRAFT_1232 0.84 +0.4 1,251,128 + +1.0 1,251,129 - +0.6 1,251,129 - +0.9 1,251,133 - -0.3 1,251,133 - -1.2 1,251,291 - EX28DRAFT_1233 0.11 +2.3 1,251,330 + EX28DRAFT_1233 0.14 +0.2 1,251,521 + EX28DRAFT_1233 0.25 -2.0 1,251,530 + EX28DRAFT_1233 0.26 -0.5 1,251,531 - EX28DRAFT_1233 0.26 +0.7 1,251,534 + EX28DRAFT_1233 0.26 -1.6 1,251,535 - EX28DRAFT_1233 0.26 +0.0 1,251,535 - EX28DRAFT_1233 0.26 +0.3 1,251,690 + EX28DRAFT_1233 0.35 +0.3 1,251,690 + EX28DRAFT_1233 0.35 -0.1 1,251,692 + EX28DRAFT_1233 0.36 -1.0 1,251,713 + EX28DRAFT_1233 0.37 +1.2 1,251,765 + EX28DRAFT_1233 0.40 -0.4 1,251,771 + EX28DRAFT_1233 0.40 +0.3 1,251,772 - EX28DRAFT_1233 0.40 +0.7 1,251,773 + EX28DRAFT_1233 0.40 -4.0 1,251,774 - EX28DRAFT_1233 0.41 +0.7 1,251,774 - EX28DRAFT_1233 0.41 -0.1 1,251,921 + EX28DRAFT_1233 0.49 +0.1 1,251,969 - EX28DRAFT_1233 0.52 -1.4 1,252,026 + EX28DRAFT_1233 0.56 -3.7
Or see this region's nucleotide sequence