Experiment: MS_media with m-arsenite 1 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt EX28DRAFT_1216 and EX28DRAFT_1217 are separated by 156 nucleotides EX28DRAFT_1217 and EX28DRAFT_1218 are separated by 61 nucleotides
EX28DRAFT_1216: EX28DRAFT_1216 - Methionine synthase II (cobalamin-independent), at 1,234,941 to 1,236,044
_1216
EX28DRAFT_1217: EX28DRAFT_1217 - Rhodanese-related sulfurtransferase, at 1,236,201 to 1,236,614
_1217
EX28DRAFT_1218: EX28DRAFT_1218 - Transcriptional regulator containing an amidase domain and an AraC-type DNA-binding HTH domain, at 1,236,676 to 1,237,695
_1218
Position (kb)
1236
1237 Strain fitness (log2 ratio)
-4
-3
-2
-1
0
1 at 1235.222 kb on - strand, within EX28DRAFT_1216 at 1235.389 kb on + strand, within EX28DRAFT_1216 at 1235.389 kb on + strand, within EX28DRAFT_1216 at 1235.557 kb on + strand, within EX28DRAFT_1216 at 1235.558 kb on - strand, within EX28DRAFT_1216 at 1236.123 kb on - strand at 1236.123 kb on - strand at 1236.144 kb on + strand at 1236.352 kb on + strand, within EX28DRAFT_1217 at 1236.436 kb on - strand, within EX28DRAFT_1217 at 1236.478 kb on - strand, within EX28DRAFT_1217 at 1236.602 kb on + strand at 1236.607 kb on + strand at 1236.649 kb on + strand at 1236.649 kb on + strand at 1236.649 kb on + strand at 1236.650 kb on - strand at 1236.650 kb on - strand at 1236.771 kb on + strand at 1236.918 kb on - strand, within EX28DRAFT_1218 at 1237.128 kb on - strand, within EX28DRAFT_1218 at 1237.207 kb on - strand, within EX28DRAFT_1218
Per-strain Table
Position Strand Gene LocusTag Fraction MS_media with m-arsenite 1 mM remove 1,235,222 - EX28DRAFT_1216 0.25 +1.2 1,235,389 + EX28DRAFT_1216 0.41 -0.4 1,235,389 + EX28DRAFT_1216 0.41 +1.1 1,235,557 + EX28DRAFT_1216 0.56 -1.0 1,235,558 - EX28DRAFT_1216 0.56 -2.2 1,236,123 - +1.3 1,236,123 - -0.0 1,236,144 + +0.5 1,236,352 + EX28DRAFT_1217 0.36 +0.3 1,236,436 - EX28DRAFT_1217 0.57 -0.9 1,236,478 - EX28DRAFT_1217 0.67 -2.8 1,236,602 + +0.4 1,236,607 + +0.1 1,236,649 + +1.0 1,236,649 + +0.6 1,236,649 + -4.1 1,236,650 - +0.5 1,236,650 - -0.6 1,236,771 + +0.1 1,236,918 - EX28DRAFT_1218 0.24 -1.6 1,237,128 - EX28DRAFT_1218 0.44 +0.3 1,237,207 - EX28DRAFT_1218 0.52 +0.3
Or see this region's nucleotide sequence