Strain Fitness in Enterobacter asburiae PDN3 around EX28DRAFT_1207

Experiment: MS_media with m-arsenite 1 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntEX28DRAFT_1205 and EX28DRAFT_1206 are separated by 20 nucleotidesEX28DRAFT_1206 and EX28DRAFT_1207 are separated by 32 nucleotidesEX28DRAFT_1207 and EX28DRAFT_1208 are separated by 33 nucleotides EX28DRAFT_1205: EX28DRAFT_1205 - Transcriptional regulators, at 1,225,139 to 1,225,573 _1205 EX28DRAFT_1206: EX28DRAFT_1206 - Helix-turn-helix domain, at 1,225,594 to 1,225,974 _1206 EX28DRAFT_1207: EX28DRAFT_1207 - MarB protein, at 1,226,007 to 1,226,225 _1207 EX28DRAFT_1208: EX28DRAFT_1208 - Predicted permease, DMT superfamily, at 1,226,259 to 1,227,161 _1208 Position (kb) 1226 1227Strain fitness (log2 ratio) -5 -4 -3 -2 -1 0 1at 1225.100 kb on - strandat 1225.190 kb on - strand, within EX28DRAFT_1205at 1225.190 kb on - strand, within EX28DRAFT_1205at 1225.196 kb on - strand, within EX28DRAFT_1205at 1225.200 kb on + strand, within EX28DRAFT_1205at 1225.232 kb on + strand, within EX28DRAFT_1205at 1225.232 kb on + strand, within EX28DRAFT_1205at 1225.300 kb on + strand, within EX28DRAFT_1205at 1225.300 kb on + strand, within EX28DRAFT_1205at 1225.301 kb on - strand, within EX28DRAFT_1205at 1225.301 kb on - strand, within EX28DRAFT_1205at 1225.301 kb on - strand, within EX28DRAFT_1205at 1225.303 kb on + strand, within EX28DRAFT_1205at 1225.304 kb on - strand, within EX28DRAFT_1205at 1225.304 kb on - strand, within EX28DRAFT_1205at 1225.304 kb on - strand, within EX28DRAFT_1205at 1225.389 kb on + strand, within EX28DRAFT_1205at 1225.426 kb on - strand, within EX28DRAFT_1205at 1225.479 kb on + strand, within EX28DRAFT_1205at 1225.507 kb on - strand, within EX28DRAFT_1205at 1225.587 kb on + strandat 1225.608 kb on + strandat 1225.609 kb on - strandat 1225.754 kb on + strand, within EX28DRAFT_1206at 1225.762 kb on + strand, within EX28DRAFT_1206at 1225.763 kb on - strand, within EX28DRAFT_1206at 1225.828 kb on + strand, within EX28DRAFT_1206at 1225.828 kb on + strand, within EX28DRAFT_1206at 1225.913 kb on - strand, within EX28DRAFT_1206at 1225.945 kb on + strandat 1225.952 kb on - strandat 1225.968 kb on + strandat 1225.969 kb on - strandat 1225.972 kb on + strandat 1225.973 kb on - strandat 1225.973 kb on - strandat 1225.985 kb on + strandat 1226.100 kb on - strand, within EX28DRAFT_1207at 1226.100 kb on - strand, within EX28DRAFT_1207at 1226.159 kb on + strand, within EX28DRAFT_1207at 1226.202 kb on + strand, within EX28DRAFT_1207at 1226.202 kb on + strand, within EX28DRAFT_1207at 1226.202 kb on + strand, within EX28DRAFT_1207at 1226.203 kb on - strand, within EX28DRAFT_1207at 1226.203 kb on - strand, within EX28DRAFT_1207at 1226.205 kb on + strandat 1226.206 kb on - strandat 1226.208 kb on - strandat 1226.208 kb on - strandat 1226.309 kb on + strandat 1226.314 kb on + strandat 1226.315 kb on - strandat 1226.559 kb on + strand, within EX28DRAFT_1208at 1226.559 kb on + strand, within EX28DRAFT_1208at 1226.559 kb on + strand, within EX28DRAFT_1208at 1226.559 kb on + strand, within EX28DRAFT_1208at 1226.560 kb on - strand, within EX28DRAFT_1208at 1226.560 kb on - strand, within EX28DRAFT_1208at 1226.667 kb on - strand, within EX28DRAFT_1208at 1226.726 kb on + strand, within EX28DRAFT_1208at 1226.801 kb on + strand, within EX28DRAFT_1208at 1226.801 kb on + strand, within EX28DRAFT_1208at 1226.802 kb on - strand, within EX28DRAFT_1208at 1227.074 kb on + strandat 1227.075 kb on - strandat 1227.118 kb on - strandat 1227.120 kb on + strandat 1227.121 kb on - strandat 1227.121 kb on - strandat 1227.162 kb on - strandat 1227.180 kb on + strandat 1227.180 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction MS_media with m-arsenite 1 mM
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1,225,100 - -1.8
1,225,190 - EX28DRAFT_1205 0.12 -3.9
1,225,190 - EX28DRAFT_1205 0.12 -0.8
1,225,196 - EX28DRAFT_1205 0.13 -1.0
1,225,200 + EX28DRAFT_1205 0.14 +0.2
1,225,232 + EX28DRAFT_1205 0.21 -0.1
1,225,232 + EX28DRAFT_1205 0.21 +0.7
1,225,300 + EX28DRAFT_1205 0.37 -0.1
1,225,300 + EX28DRAFT_1205 0.37 +0.3
1,225,301 - EX28DRAFT_1205 0.37 -1.9
1,225,301 - EX28DRAFT_1205 0.37 -2.9
1,225,301 - EX28DRAFT_1205 0.37 -2.6
1,225,303 + EX28DRAFT_1205 0.38 +1.1
1,225,304 - EX28DRAFT_1205 0.38 -3.9
1,225,304 - EX28DRAFT_1205 0.38 -1.1
1,225,304 - EX28DRAFT_1205 0.38 -0.2
1,225,389 + EX28DRAFT_1205 0.57 -0.2
1,225,426 - EX28DRAFT_1205 0.66 -1.5
1,225,479 + EX28DRAFT_1205 0.78 +0.8
1,225,507 - EX28DRAFT_1205 0.85 +0.4
1,225,587 + -1.2
1,225,608 + -0.7
1,225,609 - -1.3
1,225,754 + EX28DRAFT_1206 0.42 +0.5
1,225,762 + EX28DRAFT_1206 0.44 -0.1
1,225,763 - EX28DRAFT_1206 0.44 -0.6
1,225,828 + EX28DRAFT_1206 0.61 -0.3
1,225,828 + EX28DRAFT_1206 0.61 -0.8
1,225,913 - EX28DRAFT_1206 0.84 -1.9
1,225,945 + +0.2
1,225,952 - -2.0
1,225,968 + +1.2
1,225,969 - -3.8
1,225,972 + -1.1
1,225,973 - -0.5
1,225,973 - +1.7
1,225,985 + -0.8
1,226,100 - EX28DRAFT_1207 0.42 -1.5
1,226,100 - EX28DRAFT_1207 0.42 +1.0
1,226,159 + EX28DRAFT_1207 0.69 -1.3
1,226,202 + EX28DRAFT_1207 0.89 -1.5
1,226,202 + EX28DRAFT_1207 0.89 -5.1
1,226,202 + EX28DRAFT_1207 0.89 -2.8
1,226,203 - EX28DRAFT_1207 0.89 -0.8
1,226,203 - EX28DRAFT_1207 0.89 -1.8
1,226,205 + -1.1
1,226,206 - +0.6
1,226,208 - -0.8
1,226,208 - -0.7
1,226,309 + +0.3
1,226,314 + -0.5
1,226,315 - -0.6
1,226,559 + EX28DRAFT_1208 0.33 -1.2
1,226,559 + EX28DRAFT_1208 0.33 -3.1
1,226,559 + EX28DRAFT_1208 0.33 -1.7
1,226,559 + EX28DRAFT_1208 0.33 +0.3
1,226,560 - EX28DRAFT_1208 0.33 -0.6
1,226,560 - EX28DRAFT_1208 0.33 -4.4
1,226,667 - EX28DRAFT_1208 0.45 -1.2
1,226,726 + EX28DRAFT_1208 0.52 -1.8
1,226,801 + EX28DRAFT_1208 0.60 +0.4
1,226,801 + EX28DRAFT_1208 0.60 -0.1
1,226,802 - EX28DRAFT_1208 0.60 -0.6
1,227,074 + +0.2
1,227,075 - -1.6
1,227,118 - -2.4
1,227,120 + -0.3
1,227,121 - -2.5
1,227,121 - -3.7
1,227,162 - -0.1
1,227,180 + +0.8
1,227,180 + +0.2

Or see this region's nucleotide sequence