Experiment: MS_media with m-arsenite 1 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt EX28DRAFT_1172 and EX28DRAFT_1173 are separated by 94 nucleotides EX28DRAFT_1173 and EX28DRAFT_1174 are separated by 75 nucleotides EX28DRAFT_1174 and EX28DRAFT_1175 are separated by 38 nucleotides
EX28DRAFT_1172: EX28DRAFT_1172 - Transcriptional regulator, at 1,194,949 to 1,195,857
_1172
EX28DRAFT_1173: EX28DRAFT_1173 - Nucleoside-diphosphate-sugar epimerases, at 1,195,952 to 1,196,914
_1173
EX28DRAFT_1174: EX28DRAFT_1174 - Predicted membrane protein, at 1,196,990 to 1,197,433
_1174
EX28DRAFT_1175: EX28DRAFT_1175 - Domain of unknown function (DUF4354), at 1,197,472 to 1,197,900
_1175
Position (kb)
1195
1196
1197 Strain fitness (log2 ratio)
-4
-3
-2
-1
0
1
2 at 1195.124 kb on - strand, within EX28DRAFT_1172 at 1195.166 kb on - strand, within EX28DRAFT_1172 at 1195.166 kb on - strand, within EX28DRAFT_1172 at 1195.286 kb on - strand, within EX28DRAFT_1172 at 1195.289 kb on - strand, within EX28DRAFT_1172 at 1195.300 kb on - strand, within EX28DRAFT_1172 at 1195.329 kb on - strand, within EX28DRAFT_1172 at 1195.329 kb on - strand, within EX28DRAFT_1172 at 1195.498 kb on + strand, within EX28DRAFT_1172 at 1195.498 kb on + strand, within EX28DRAFT_1172 at 1195.740 kb on + strand, within EX28DRAFT_1172 at 1195.741 kb on - strand, within EX28DRAFT_1172 at 1195.741 kb on - strand, within EX28DRAFT_1172 at 1195.882 kb on - strand at 1195.966 kb on + strand at 1195.966 kb on + strand at 1195.967 kb on - strand at 1195.967 kb on - strand at 1195.967 kb on - strand at 1195.977 kb on + strand at 1195.977 kb on + strand at 1196.227 kb on + strand, within EX28DRAFT_1173 at 1196.263 kb on - strand, within EX28DRAFT_1173 at 1196.285 kb on + strand, within EX28DRAFT_1173 at 1196.286 kb on - strand, within EX28DRAFT_1173 at 1196.287 kb on + strand, within EX28DRAFT_1173 at 1196.288 kb on - strand, within EX28DRAFT_1173 at 1196.291 kb on + strand, within EX28DRAFT_1173 at 1196.292 kb on - strand, within EX28DRAFT_1173 at 1196.317 kb on - strand, within EX28DRAFT_1173 at 1196.362 kb on - strand, within EX28DRAFT_1173 at 1196.394 kb on - strand, within EX28DRAFT_1173 at 1196.394 kb on - strand, within EX28DRAFT_1173 at 1196.484 kb on + strand, within EX28DRAFT_1173 at 1196.676 kb on + strand, within EX28DRAFT_1173 at 1196.705 kb on - strand, within EX28DRAFT_1173 at 1196.811 kb on + strand, within EX28DRAFT_1173 at 1196.845 kb on - strand at 1196.888 kb on - strand at 1196.888 kb on - strand at 1196.912 kb on + strand at 1196.913 kb on - strand at 1196.918 kb on - strand at 1196.948 kb on - strand at 1196.954 kb on + strand at 1196.957 kb on - strand at 1197.361 kb on + strand, within EX28DRAFT_1174 at 1197.361 kb on + strand, within EX28DRAFT_1174 at 1197.384 kb on - strand, within EX28DRAFT_1174 at 1197.429 kb on + strand at 1197.431 kb on + strand at 1197.431 kb on + strand at 1197.431 kb on + strand at 1197.431 kb on + strand at 1197.431 kb on + strand at 1197.432 kb on - strand at 1197.432 kb on - strand at 1197.432 kb on - strand at 1197.435 kb on + strand at 1197.435 kb on + strand at 1197.436 kb on - strand at 1197.436 kb on - strand at 1197.436 kb on - strand at 1197.436 kb on - strand at 1197.436 kb on - strand at 1197.437 kb on + strand at 1197.438 kb on - strand at 1197.438 kb on - strand at 1197.438 kb on - strand at 1197.438 kb on - strand at 1197.438 kb on - strand at 1197.438 kb on - strand at 1197.440 kb on + strand at 1197.440 kb on + strand at 1197.643 kb on + strand, within EX28DRAFT_1175 at 1197.646 kb on - strand, within EX28DRAFT_1175 at 1197.655 kb on + strand, within EX28DRAFT_1175 at 1197.657 kb on + strand, within EX28DRAFT_1175 at 1197.711 kb on + strand, within EX28DRAFT_1175 at 1197.712 kb on - strand, within EX28DRAFT_1175 at 1197.807 kb on + strand, within EX28DRAFT_1175 at 1197.807 kb on + strand, within EX28DRAFT_1175 at 1197.808 kb on - strand, within EX28DRAFT_1175
Per-strain Table
Position Strand Gene LocusTag Fraction MS_media with m-arsenite 1 mM remove 1,195,124 - EX28DRAFT_1172 0.19 -3.1 1,195,166 - EX28DRAFT_1172 0.24 +0.1 1,195,166 - EX28DRAFT_1172 0.24 +0.4 1,195,286 - EX28DRAFT_1172 0.37 -1.2 1,195,289 - EX28DRAFT_1172 0.37 +1.8 1,195,300 - EX28DRAFT_1172 0.39 -3.2 1,195,329 - EX28DRAFT_1172 0.42 -0.2 1,195,329 - EX28DRAFT_1172 0.42 +0.4 1,195,498 + EX28DRAFT_1172 0.60 -3.7 1,195,498 + EX28DRAFT_1172 0.60 -1.7 1,195,740 + EX28DRAFT_1172 0.87 -0.3 1,195,741 - EX28DRAFT_1172 0.87 -3.8 1,195,741 - EX28DRAFT_1172 0.87 -0.2 1,195,882 - +0.0 1,195,966 + +1.3 1,195,966 + +0.2 1,195,967 - +1.2 1,195,967 - +0.1 1,195,967 - +0.5 1,195,977 + +1.4 1,195,977 + -0.4 1,196,227 + EX28DRAFT_1173 0.29 +0.2 1,196,263 - EX28DRAFT_1173 0.32 -2.5 1,196,285 + EX28DRAFT_1173 0.35 +1.3 1,196,286 - EX28DRAFT_1173 0.35 +0.1 1,196,287 + EX28DRAFT_1173 0.35 -0.1 1,196,288 - EX28DRAFT_1173 0.35 -3.1 1,196,291 + EX28DRAFT_1173 0.35 -1.8 1,196,292 - EX28DRAFT_1173 0.35 -2.4 1,196,317 - EX28DRAFT_1173 0.38 -2.0 1,196,362 - EX28DRAFT_1173 0.43 +0.6 1,196,394 - EX28DRAFT_1173 0.46 -0.4 1,196,394 - EX28DRAFT_1173 0.46 -0.3 1,196,484 + EX28DRAFT_1173 0.55 +0.0 1,196,676 + EX28DRAFT_1173 0.75 -0.5 1,196,705 - EX28DRAFT_1173 0.78 +0.6 1,196,811 + EX28DRAFT_1173 0.89 -2.3 1,196,845 - -0.1 1,196,888 - -0.2 1,196,888 - +0.6 1,196,912 + -0.6 1,196,913 - -2.0 1,196,918 - -0.1 1,196,948 - -3.1 1,196,954 + +0.9 1,196,957 - +0.5 1,197,361 + EX28DRAFT_1174 0.84 -0.2 1,197,361 + EX28DRAFT_1174 0.84 -0.4 1,197,384 - EX28DRAFT_1174 0.89 -0.1 1,197,429 + -0.3 1,197,431 + -2.2 1,197,431 + -1.0 1,197,431 + +0.3 1,197,431 + -2.8 1,197,431 + -0.5 1,197,432 - +0.2 1,197,432 - +0.1 1,197,432 - +0.1 1,197,435 + +0.0 1,197,435 + -3.3 1,197,436 - -1.9 1,197,436 - -0.1 1,197,436 - +0.1 1,197,436 - +1.3 1,197,436 - +1.2 1,197,437 + -1.2 1,197,438 - -1.6 1,197,438 - -0.2 1,197,438 - +1.7 1,197,438 - -1.1 1,197,438 - +0.9 1,197,438 - +1.7 1,197,440 + +0.3 1,197,440 + -4.4 1,197,643 + EX28DRAFT_1175 0.40 -1.6 1,197,646 - EX28DRAFT_1175 0.41 +2.3 1,197,655 + EX28DRAFT_1175 0.43 -0.7 1,197,657 + EX28DRAFT_1175 0.43 -1.0 1,197,711 + EX28DRAFT_1175 0.56 +0.8 1,197,712 - EX28DRAFT_1175 0.56 -3.9 1,197,807 + EX28DRAFT_1175 0.78 -0.8 1,197,807 + EX28DRAFT_1175 0.78 -0.5 1,197,808 - EX28DRAFT_1175 0.78 -3.6
Or see this region's nucleotide sequence