Strain Fitness in Enterobacter asburiae PDN3 around EX28DRAFT_0980

Experiment: MS_media with m-arsenite 1 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntEX28DRAFT_0977 and EX28DRAFT_0978 overlap by 1 nucleotidesEX28DRAFT_0978 and EX28DRAFT_0979 are separated by 12 nucleotidesEX28DRAFT_0979 and EX28DRAFT_0980 are separated by 197 nucleotidesEX28DRAFT_0980 and EX28DRAFT_0981 are separated by 14 nucleotides EX28DRAFT_0977: EX28DRAFT_0977 - phage shock protein B, at 979,327 to 979,551 _0977 EX28DRAFT_0978: EX28DRAFT_0978 - phage shock protein C (PspC) family protein, at 979,551 to 979,910 _0978 EX28DRAFT_0979: EX28DRAFT_0979 - phage shock protein PspD, at 979,923 to 980,147 _0979 EX28DRAFT_0980: EX28DRAFT_0980 - Glycosidases, at 980,345 to 982,042 _0980 EX28DRAFT_0981: EX28DRAFT_0981 - ABC-type sugar transport system, periplasmic component, at 982,057 to 983,349 _0981 Position (kb) 980 981 982 983Strain fitness (log2 ratio) -3 -2 -1 0 1at 979.402 kb on + strand, within EX28DRAFT_0977at 979.704 kb on - strand, within EX28DRAFT_0978at 979.719 kb on + strand, within EX28DRAFT_0978at 979.719 kb on + strand, within EX28DRAFT_0978at 979.719 kb on + strand, within EX28DRAFT_0978at 979.720 kb on - strand, within EX28DRAFT_0978at 979.720 kb on - strand, within EX28DRAFT_0978at 979.720 kb on - strand, within EX28DRAFT_0978at 979.861 kb on - strand, within EX28DRAFT_0978at 979.909 kb on - strandat 979.957 kb on + strand, within EX28DRAFT_0979at 980.134 kb on - strandat 980.137 kb on + strandat 980.516 kb on + strand, within EX28DRAFT_0980at 980.573 kb on + strand, within EX28DRAFT_0980at 980.800 kb on - strand, within EX28DRAFT_0980at 981.008 kb on + strand, within EX28DRAFT_0980at 981.029 kb on + strand, within EX28DRAFT_0980at 981.030 kb on - strand, within EX28DRAFT_0980at 981.031 kb on + strand, within EX28DRAFT_0980at 981.031 kb on + strand, within EX28DRAFT_0980at 981.201 kb on - strand, within EX28DRAFT_0980at 981.201 kb on - strand, within EX28DRAFT_0980at 981.236 kb on + strand, within EX28DRAFT_0980at 981.528 kb on + strand, within EX28DRAFT_0980at 981.594 kb on + strand, within EX28DRAFT_0980at 981.678 kb on - strand, within EX28DRAFT_0980at 982.155 kb on + strandat 982.270 kb on + strand, within EX28DRAFT_0981at 982.270 kb on + strand, within EX28DRAFT_0981at 982.270 kb on + strand, within EX28DRAFT_0981at 982.270 kb on + strand, within EX28DRAFT_0981at 982.271 kb on - strand, within EX28DRAFT_0981at 982.271 kb on - strand, within EX28DRAFT_0981at 982.288 kb on - strand, within EX28DRAFT_0981at 982.329 kb on + strand, within EX28DRAFT_0981at 982.339 kb on + strand, within EX28DRAFT_0981at 982.340 kb on - strand, within EX28DRAFT_0981at 982.407 kb on - strand, within EX28DRAFT_0981at 982.423 kb on + strand, within EX28DRAFT_0981at 982.423 kb on + strand, within EX28DRAFT_0981at 982.423 kb on + strand, within EX28DRAFT_0981at 982.424 kb on - strand, within EX28DRAFT_0981at 982.424 kb on - strand, within EX28DRAFT_0981at 982.510 kb on + strand, within EX28DRAFT_0981at 982.759 kb on - strand, within EX28DRAFT_0981at 982.858 kb on + strand, within EX28DRAFT_0981at 982.858 kb on + strand, within EX28DRAFT_0981at 982.859 kb on - strand, within EX28DRAFT_0981

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Per-strain Table

Position Strand Gene LocusTag Fraction MS_media with m-arsenite 1 mM
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979,402 + EX28DRAFT_0977 0.33 +0.2
979,704 - EX28DRAFT_0978 0.42 -0.6
979,719 + EX28DRAFT_0978 0.47 -1.6
979,719 + EX28DRAFT_0978 0.47 +0.0
979,719 + EX28DRAFT_0978 0.47 +0.6
979,720 - EX28DRAFT_0978 0.47 -2.1
979,720 - EX28DRAFT_0978 0.47 +0.3
979,720 - EX28DRAFT_0978 0.47 -2.1
979,861 - EX28DRAFT_0978 0.86 +0.3
979,909 - +0.9
979,957 + EX28DRAFT_0979 0.15 +1.3
980,134 - +0.3
980,137 + -3.1
980,516 + EX28DRAFT_0980 0.10 +1.2
980,573 + EX28DRAFT_0980 0.13 +0.5
980,800 - EX28DRAFT_0980 0.27 +0.3
981,008 + EX28DRAFT_0980 0.39 +0.3
981,029 + EX28DRAFT_0980 0.40 +0.2
981,030 - EX28DRAFT_0980 0.40 -0.1
981,031 + EX28DRAFT_0980 0.40 +0.2
981,031 + EX28DRAFT_0980 0.40 +0.1
981,201 - EX28DRAFT_0980 0.50 -0.1
981,201 - EX28DRAFT_0980 0.50 +0.4
981,236 + EX28DRAFT_0980 0.52 +0.4
981,528 + EX28DRAFT_0980 0.70 -0.1
981,594 + EX28DRAFT_0980 0.74 -0.3
981,678 - EX28DRAFT_0980 0.79 +0.7
982,155 + +0.4
982,270 + EX28DRAFT_0981 0.16 -0.8
982,270 + EX28DRAFT_0981 0.16 -1.3
982,270 + EX28DRAFT_0981 0.16 -0.8
982,270 + EX28DRAFT_0981 0.16 -0.6
982,271 - EX28DRAFT_0981 0.17 -0.7
982,271 - EX28DRAFT_0981 0.17 -0.3
982,288 - EX28DRAFT_0981 0.18 +0.4
982,329 + EX28DRAFT_0981 0.21 -0.6
982,339 + EX28DRAFT_0981 0.22 +0.5
982,340 - EX28DRAFT_0981 0.22 -0.5
982,407 - EX28DRAFT_0981 0.27 -1.0
982,423 + EX28DRAFT_0981 0.28 +0.4
982,423 + EX28DRAFT_0981 0.28 -0.8
982,423 + EX28DRAFT_0981 0.28 -0.2
982,424 - EX28DRAFT_0981 0.28 +0.3
982,424 - EX28DRAFT_0981 0.28 -0.2
982,510 + EX28DRAFT_0981 0.35 +0.1
982,759 - EX28DRAFT_0981 0.54 -0.9
982,858 + EX28DRAFT_0981 0.62 +0.1
982,858 + EX28DRAFT_0981 0.62 -0.3
982,859 - EX28DRAFT_0981 0.62 +0.7

Or see this region's nucleotide sequence