Experiment: MS_media with m-arsenite 1 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt EX28DRAFT_0940 and EX28DRAFT_0941 are separated by 36 nucleotides EX28DRAFT_0941 and EX28DRAFT_0942 overlap by 4 nucleotides
EX28DRAFT_0940: EX28DRAFT_0940 - pseudouridine synthase, at 939,087 to 939,962
_0940
EX28DRAFT_0941: EX28DRAFT_0941 - cob(I)alamin adenosyltransferase, at 939,999 to 940,589
_0941
EX28DRAFT_0942: EX28DRAFT_0942 - Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases), at 940,586 to 941,347
_0942
Position (kb) 939
940
941 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1 at 939.004 kb on + strand at 939.005 kb on - strand at 939.006 kb on + strand at 939.006 kb on + strand at 939.006 kb on + strand at 939.300 kb on + strand, within EX28DRAFT_0940 at 939.304 kb on - strand, within EX28DRAFT_0940 at 939.637 kb on - strand, within EX28DRAFT_0940 at 939.772 kb on - strand, within EX28DRAFT_0940 at 939.801 kb on + strand, within EX28DRAFT_0940 at 940.198 kb on + strand, within EX28DRAFT_0941 at 940.198 kb on + strand, within EX28DRAFT_0941 at 940.199 kb on - strand, within EX28DRAFT_0941 at 940.199 kb on - strand, within EX28DRAFT_0941 at 940.199 kb on - strand, within EX28DRAFT_0941 at 940.316 kb on + strand, within EX28DRAFT_0941 at 940.607 kb on - strand at 940.674 kb on + strand, within EX28DRAFT_0942 at 940.674 kb on + strand, within EX28DRAFT_0942 at 940.684 kb on + strand, within EX28DRAFT_0942 at 940.685 kb on - strand, within EX28DRAFT_0942 at 940.685 kb on - strand, within EX28DRAFT_0942 at 940.854 kb on + strand, within EX28DRAFT_0942 at 941.135 kb on + strand, within EX28DRAFT_0942 at 941.135 kb on + strand, within EX28DRAFT_0942 at 941.149 kb on - strand, within EX28DRAFT_0942 at 941.305 kb on + strand at 941.305 kb on + strand at 941.340 kb on + strand at 941.386 kb on + strand at 941.386 kb on + strand at 941.388 kb on + strand at 941.421 kb on + strand at 941.425 kb on - strand at 941.475 kb on + strand at 941.557 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction MS_media with m-arsenite 1 mM remove 939,004 + +0.1 939,005 - +1.0 939,006 + +0.5 939,006 + -0.3 939,006 + +0.2 939,300 + EX28DRAFT_0940 0.24 +0.6 939,304 - EX28DRAFT_0940 0.25 -0.3 939,637 - EX28DRAFT_0940 0.63 +1.2 939,772 - EX28DRAFT_0940 0.78 +0.2 939,801 + EX28DRAFT_0940 0.82 +0.8 940,198 + EX28DRAFT_0941 0.34 -0.2 940,198 + EX28DRAFT_0941 0.34 -0.2 940,199 - EX28DRAFT_0941 0.34 -0.3 940,199 - EX28DRAFT_0941 0.34 -1.7 940,199 - EX28DRAFT_0941 0.34 -2.3 940,316 + EX28DRAFT_0941 0.54 +0.3 940,607 - -0.2 940,674 + EX28DRAFT_0942 0.12 -2.8 940,674 + EX28DRAFT_0942 0.12 +0.5 940,684 + EX28DRAFT_0942 0.13 +0.4 940,685 - EX28DRAFT_0942 0.13 -0.3 940,685 - EX28DRAFT_0942 0.13 +0.9 940,854 + EX28DRAFT_0942 0.35 +1.0 941,135 + EX28DRAFT_0942 0.72 -0.6 941,135 + EX28DRAFT_0942 0.72 -4.0 941,149 - EX28DRAFT_0942 0.74 -0.9 941,305 + +0.7 941,305 + -0.2 941,340 + -0.1 941,386 + -2.4 941,386 + +0.6 941,388 + -0.7 941,421 + -0.4 941,425 - -0.0 941,475 + -2.5 941,557 - -1.1
Or see this region's nucleotide sequence