Experiment: MS_media with m-arsenite 1 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt EX28DRAFT_0938 and EX28DRAFT_0939 overlap by 4 nucleotides EX28DRAFT_0939 and EX28DRAFT_0940 are separated by 96 nucleotides EX28DRAFT_0940 and EX28DRAFT_0941 are separated by 36 nucleotides EX28DRAFT_0941 and EX28DRAFT_0942 overlap by 4 nucleotides
EX28DRAFT_0938: EX28DRAFT_0938 - Predicted metal-dependent phosphoesterases (PHP family), at 937,480 to 938,373
_0938
EX28DRAFT_0939: EX28DRAFT_0939 - tRNA threonylcarbamoyl adenosine modification protein, Sua5/YciO/YrdC/YwlC family, at 938,370 to 938,990
_0939
EX28DRAFT_0940: EX28DRAFT_0940 - pseudouridine synthase, at 939,087 to 939,962
_0940
EX28DRAFT_0941: EX28DRAFT_0941 - cob(I)alamin adenosyltransferase, at 939,999 to 940,589
_0941
EX28DRAFT_0942: EX28DRAFT_0942 - Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases), at 940,586 to 941,347
_0942
Position (kb) 939
940 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 938.095 kb on + strand, within EX28DRAFT_0938 at 938.097 kb on + strand, within EX28DRAFT_0938 at 938.098 kb on - strand, within EX28DRAFT_0938 at 938.369 kb on + strand at 938.370 kb on - strand at 938.370 kb on - strand at 938.507 kb on + strand, within EX28DRAFT_0939 at 938.558 kb on + strand, within EX28DRAFT_0939 at 938.601 kb on + strand, within EX28DRAFT_0939 at 938.602 kb on - strand, within EX28DRAFT_0939 at 938.602 kb on - strand, within EX28DRAFT_0939 at 938.602 kb on - strand, within EX28DRAFT_0939 at 938.607 kb on + strand, within EX28DRAFT_0939 at 938.608 kb on - strand, within EX28DRAFT_0939 at 938.608 kb on - strand, within EX28DRAFT_0939 at 938.608 kb on - strand, within EX28DRAFT_0939 at 938.608 kb on - strand, within EX28DRAFT_0939 at 938.608 kb on - strand, within EX28DRAFT_0939 at 938.658 kb on + strand, within EX28DRAFT_0939 at 938.658 kb on + strand, within EX28DRAFT_0939 at 938.658 kb on + strand, within EX28DRAFT_0939 at 938.659 kb on - strand, within EX28DRAFT_0939 at 938.659 kb on - strand, within EX28DRAFT_0939 at 938.659 kb on - strand, within EX28DRAFT_0939 at 938.690 kb on - strand, within EX28DRAFT_0939 at 938.975 kb on - strand at 938.975 kb on - strand at 938.996 kb on + strand at 938.996 kb on + strand at 938.997 kb on - strand at 939.004 kb on + strand at 939.005 kb on - strand at 939.006 kb on + strand at 939.006 kb on + strand at 939.006 kb on + strand at 939.300 kb on + strand, within EX28DRAFT_0940 at 939.304 kb on - strand, within EX28DRAFT_0940 at 939.637 kb on - strand, within EX28DRAFT_0940 at 939.772 kb on - strand, within EX28DRAFT_0940 at 939.801 kb on + strand, within EX28DRAFT_0940 at 940.198 kb on + strand, within EX28DRAFT_0941 at 940.198 kb on + strand, within EX28DRAFT_0941 at 940.199 kb on - strand, within EX28DRAFT_0941 at 940.199 kb on - strand, within EX28DRAFT_0941 at 940.199 kb on - strand, within EX28DRAFT_0941 at 940.316 kb on + strand, within EX28DRAFT_0941 at 940.607 kb on - strand at 940.674 kb on + strand, within EX28DRAFT_0942 at 940.674 kb on + strand, within EX28DRAFT_0942 at 940.684 kb on + strand, within EX28DRAFT_0942 at 940.685 kb on - strand, within EX28DRAFT_0942 at 940.685 kb on - strand, within EX28DRAFT_0942 at 940.854 kb on + strand, within EX28DRAFT_0942
Per-strain Table
Position Strand Gene LocusTag Fraction MS_media with m-arsenite 1 mM remove 938,095 + EX28DRAFT_0938 0.69 +1.3 938,097 + EX28DRAFT_0938 0.69 -0.1 938,098 - EX28DRAFT_0938 0.69 -0.8 938,369 + -0.2 938,370 - +1.0 938,370 - -0.4 938,507 + EX28DRAFT_0939 0.22 -0.0 938,558 + EX28DRAFT_0939 0.30 -0.4 938,601 + EX28DRAFT_0939 0.37 -0.4 938,602 - EX28DRAFT_0939 0.37 -1.1 938,602 - EX28DRAFT_0939 0.37 +0.4 938,602 - EX28DRAFT_0939 0.37 +0.8 938,607 + EX28DRAFT_0939 0.38 +1.0 938,608 - EX28DRAFT_0939 0.38 +0.0 938,608 - EX28DRAFT_0939 0.38 -0.5 938,608 - EX28DRAFT_0939 0.38 -2.8 938,608 - EX28DRAFT_0939 0.38 -1.0 938,608 - EX28DRAFT_0939 0.38 -0.2 938,658 + EX28DRAFT_0939 0.46 -0.5 938,658 + EX28DRAFT_0939 0.46 +0.6 938,658 + EX28DRAFT_0939 0.46 +0.4 938,659 - EX28DRAFT_0939 0.47 -1.9 938,659 - EX28DRAFT_0939 0.47 +3.3 938,659 - EX28DRAFT_0939 0.47 +0.9 938,690 - EX28DRAFT_0939 0.52 +1.6 938,975 - -0.4 938,975 - -0.7 938,996 + -2.8 938,996 + +0.3 938,997 - +3.4 939,004 + +0.1 939,005 - +1.0 939,006 + +0.5 939,006 + -0.3 939,006 + +0.2 939,300 + EX28DRAFT_0940 0.24 +0.6 939,304 - EX28DRAFT_0940 0.25 -0.3 939,637 - EX28DRAFT_0940 0.63 +1.2 939,772 - EX28DRAFT_0940 0.78 +0.2 939,801 + EX28DRAFT_0940 0.82 +0.8 940,198 + EX28DRAFT_0941 0.34 -0.2 940,198 + EX28DRAFT_0941 0.34 -0.2 940,199 - EX28DRAFT_0941 0.34 -0.3 940,199 - EX28DRAFT_0941 0.34 -1.7 940,199 - EX28DRAFT_0941 0.34 -2.3 940,316 + EX28DRAFT_0941 0.54 +0.3 940,607 - -0.2 940,674 + EX28DRAFT_0942 0.12 -2.8 940,674 + EX28DRAFT_0942 0.12 +0.5 940,684 + EX28DRAFT_0942 0.13 +0.4 940,685 - EX28DRAFT_0942 0.13 -0.3 940,685 - EX28DRAFT_0942 0.13 +0.9 940,854 + EX28DRAFT_0942 0.35 +1.0
Or see this region's nucleotide sequence