Strain Fitness in Enterobacter asburiae PDN3 around EX28DRAFT_0915

Experiment: MS_media with m-arsenite 1 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntEX28DRAFT_0912 and EX28DRAFT_0913 are separated by 60 nucleotidesEX28DRAFT_0913 and EX28DRAFT_0914 are separated by 32 nucleotidesEX28DRAFT_0914 and EX28DRAFT_0915 overlap by 11 nucleotidesEX28DRAFT_0915 and EX28DRAFT_0916 are separated by 12 nucleotidesEX28DRAFT_0916 and EX28DRAFT_0917 overlap by 4 nucleotides EX28DRAFT_0912: EX28DRAFT_0912 - phage contractile tail tube protein, P2 family, at 915,063 to 915,581 _0912 EX28DRAFT_0913: EX28DRAFT_0913 - Mu-like prophage FluMu protein gp41, at 915,642 to 915,950 _0913 EX28DRAFT_0914: EX28DRAFT_0914 - Phage P2 GpE, at 915,983 to 916,105 _0914 EX28DRAFT_0915: EX28DRAFT_0915 - phage tail tape measure protein, TP901 family, core region, at 916,095 to 918,542 _0915 EX28DRAFT_0916: EX28DRAFT_0916 - Phage protein U, at 918,555 to 919,019 _0916 EX28DRAFT_0917: EX28DRAFT_0917 - Phage protein D, at 919,016 to 920,185 _0917 Position (kb) 916 917 918 919Strain fitness (log2 ratio) -5 -4 -3 -2 -1 0 1at 915.117 kb on + strand, within EX28DRAFT_0912at 915.118 kb on - strand, within EX28DRAFT_0912at 915.360 kb on - strand, within EX28DRAFT_0912at 915.403 kb on - strand, within EX28DRAFT_0912at 915.465 kb on + strand, within EX28DRAFT_0912at 915.465 kb on + strand, within EX28DRAFT_0912at 915.616 kb on + strandat 915.616 kb on + strandat 915.616 kb on + strandat 915.617 kb on - strandat 915.846 kb on + strand, within EX28DRAFT_0913at 916.002 kb on + strand, within EX28DRAFT_0914at 916.002 kb on + strand, within EX28DRAFT_0914at 916.026 kb on + strand, within EX28DRAFT_0914at 916.163 kb on + strandat 916.301 kb on + strandat 916.302 kb on - strandat 916.302 kb on - strandat 916.425 kb on + strand, within EX28DRAFT_0915at 916.426 kb on - strand, within EX28DRAFT_0915at 916.426 kb on - strand, within EX28DRAFT_0915at 916.484 kb on + strand, within EX28DRAFT_0915at 916.484 kb on + strand, within EX28DRAFT_0915at 916.485 kb on - strand, within EX28DRAFT_0915at 916.878 kb on - strand, within EX28DRAFT_0915at 916.878 kb on - strand, within EX28DRAFT_0915at 916.878 kb on - strand, within EX28DRAFT_0915at 916.953 kb on - strand, within EX28DRAFT_0915at 917.109 kb on + strand, within EX28DRAFT_0915at 917.110 kb on - strand, within EX28DRAFT_0915at 917.273 kb on + strand, within EX28DRAFT_0915at 917.394 kb on + strand, within EX28DRAFT_0915at 917.577 kb on + strand, within EX28DRAFT_0915at 917.577 kb on + strand, within EX28DRAFT_0915at 917.577 kb on + strand, within EX28DRAFT_0915at 917.628 kb on - strand, within EX28DRAFT_0915at 917.653 kb on - strand, within EX28DRAFT_0915at 917.653 kb on - strand, within EX28DRAFT_0915at 917.687 kb on + strand, within EX28DRAFT_0915at 917.688 kb on - strand, within EX28DRAFT_0915at 917.713 kb on + strand, within EX28DRAFT_0915at 917.716 kb on + strand, within EX28DRAFT_0915at 917.716 kb on + strand, within EX28DRAFT_0915at 917.768 kb on - strand, within EX28DRAFT_0915at 917.846 kb on + strand, within EX28DRAFT_0915at 917.876 kb on + strand, within EX28DRAFT_0915at 918.155 kb on + strand, within EX28DRAFT_0915at 918.156 kb on - strand, within EX28DRAFT_0915at 918.161 kb on - strand, within EX28DRAFT_0915at 918.200 kb on + strand, within EX28DRAFT_0915at 918.321 kb on + strandat 918.321 kb on + strandat 918.322 kb on - strandat 918.322 kb on - strandat 918.322 kb on - strandat 918.322 kb on - strandat 918.323 kb on + strandat 918.342 kb on + strandat 918.343 kb on - strandat 918.387 kb on - strandat 918.393 kb on + strandat 918.394 kb on - strandat 918.394 kb on - strandat 918.394 kb on - strandat 918.394 kb on - strandat 918.394 kb on - strandat 918.397 kb on + strandat 918.417 kb on + strandat 918.417 kb on + strandat 918.419 kb on + strandat 918.419 kb on + strandat 918.420 kb on - strandat 918.527 kb on + strandat 918.559 kb on + strandat 918.612 kb on - strand, within EX28DRAFT_0916at 918.679 kb on - strand, within EX28DRAFT_0916at 918.827 kb on + strand, within EX28DRAFT_0916at 918.831 kb on + strand, within EX28DRAFT_0916at 918.831 kb on + strand, within EX28DRAFT_0916at 918.831 kb on + strand, within EX28DRAFT_0916at 918.831 kb on + strand, within EX28DRAFT_0916at 918.831 kb on + strand, within EX28DRAFT_0916at 918.831 kb on + strand, within EX28DRAFT_0916at 918.831 kb on + strand, within EX28DRAFT_0916at 918.831 kb on + strand, within EX28DRAFT_0916at 918.831 kb on + strand, within EX28DRAFT_0916at 918.831 kb on + strand, within EX28DRAFT_0916at 918.831 kb on + strand, within EX28DRAFT_0916at 918.832 kb on - strand, within EX28DRAFT_0916at 918.832 kb on - strand, within EX28DRAFT_0916at 918.832 kb on - strand, within EX28DRAFT_0916at 918.832 kb on - strand, within EX28DRAFT_0916at 918.832 kb on - strand, within EX28DRAFT_0916at 918.832 kb on - strand, within EX28DRAFT_0916at 918.946 kb on - strand, within EX28DRAFT_0916at 919.197 kb on + strand, within EX28DRAFT_0917at 919.197 kb on + strand, within EX28DRAFT_0917at 919.312 kb on + strand, within EX28DRAFT_0917at 919.351 kb on + strand, within EX28DRAFT_0917at 919.430 kb on - strand, within EX28DRAFT_0917

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Per-strain Table

Position Strand Gene LocusTag Fraction MS_media with m-arsenite 1 mM
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915,117 + EX28DRAFT_0912 0.10 -0.6
915,118 - EX28DRAFT_0912 0.11 -0.7
915,360 - EX28DRAFT_0912 0.57 -4.1
915,403 - EX28DRAFT_0912 0.66 +0.1
915,465 + EX28DRAFT_0912 0.77 -0.9
915,465 + EX28DRAFT_0912 0.77 +0.2
915,616 + +0.5
915,616 + -0.3
915,616 + +0.7
915,617 - +0.6
915,846 + EX28DRAFT_0913 0.66 -0.6
916,002 + EX28DRAFT_0914 0.15 -0.7
916,002 + EX28DRAFT_0914 0.15 +0.3
916,026 + EX28DRAFT_0914 0.35 +0.3
916,163 + -0.6
916,301 + -1.4
916,302 - -4.8
916,302 - -1.4
916,425 + EX28DRAFT_0915 0.13 -0.3
916,426 - EX28DRAFT_0915 0.14 -0.0
916,426 - EX28DRAFT_0915 0.14 -0.1
916,484 + EX28DRAFT_0915 0.16 -0.3
916,484 + EX28DRAFT_0915 0.16 -0.6
916,485 - EX28DRAFT_0915 0.16 +0.2
916,878 - EX28DRAFT_0915 0.32 +0.2
916,878 - EX28DRAFT_0915 0.32 -0.0
916,878 - EX28DRAFT_0915 0.32 -0.5
916,953 - EX28DRAFT_0915 0.35 -2.4
917,109 + EX28DRAFT_0915 0.41 +0.0
917,110 - EX28DRAFT_0915 0.41 -0.6
917,273 + EX28DRAFT_0915 0.48 +1.2
917,394 + EX28DRAFT_0915 0.53 -1.2
917,577 + EX28DRAFT_0915 0.61 +0.2
917,577 + EX28DRAFT_0915 0.61 +0.5
917,577 + EX28DRAFT_0915 0.61 -0.7
917,628 - EX28DRAFT_0915 0.63 +1.3
917,653 - EX28DRAFT_0915 0.64 +0.0
917,653 - EX28DRAFT_0915 0.64 +0.3
917,687 + EX28DRAFT_0915 0.65 -1.3
917,688 - EX28DRAFT_0915 0.65 -0.7
917,713 + EX28DRAFT_0915 0.66 -0.0
917,716 + EX28DRAFT_0915 0.66 -0.6
917,716 + EX28DRAFT_0915 0.66 +0.2
917,768 - EX28DRAFT_0915 0.68 -0.0
917,846 + EX28DRAFT_0915 0.72 -0.5
917,876 + EX28DRAFT_0915 0.73 -0.0
918,155 + EX28DRAFT_0915 0.84 -0.6
918,156 - EX28DRAFT_0915 0.84 -4.1
918,161 - EX28DRAFT_0915 0.84 +0.6
918,200 + EX28DRAFT_0915 0.86 +0.7
918,321 + -0.1
918,321 + +1.5
918,322 - -2.6
918,322 - +0.9
918,322 - +0.1
918,322 - -0.2
918,323 + -0.5
918,342 + +0.1
918,343 - +0.9
918,387 - -0.2
918,393 + +0.8
918,394 - +0.7
918,394 - -1.7
918,394 - -3.4
918,394 - -0.4
918,394 - -1.3
918,397 + -0.1
918,417 + +0.4
918,417 + +0.4
918,419 + -0.5
918,419 + -0.7
918,420 - +0.6
918,527 + +0.1
918,559 + -0.6
918,612 - EX28DRAFT_0916 0.12 -1.0
918,679 - EX28DRAFT_0916 0.27 +0.2
918,827 + EX28DRAFT_0916 0.58 +0.3
918,831 + EX28DRAFT_0916 0.59 +0.2
918,831 + EX28DRAFT_0916 0.59 -0.7
918,831 + EX28DRAFT_0916 0.59 +0.8
918,831 + EX28DRAFT_0916 0.59 -2.8
918,831 + EX28DRAFT_0916 0.59 -0.9
918,831 + EX28DRAFT_0916 0.59 +0.5
918,831 + EX28DRAFT_0916 0.59 +0.6
918,831 + EX28DRAFT_0916 0.59 +1.1
918,831 + EX28DRAFT_0916 0.59 -0.3
918,831 + EX28DRAFT_0916 0.59 +0.4
918,831 + EX28DRAFT_0916 0.59 +0.3
918,832 - EX28DRAFT_0916 0.60 -4.0
918,832 - EX28DRAFT_0916 0.60 -0.4
918,832 - EX28DRAFT_0916 0.60 -0.9
918,832 - EX28DRAFT_0916 0.60 -0.1
918,832 - EX28DRAFT_0916 0.60 +0.2
918,832 - EX28DRAFT_0916 0.60 +0.6
918,946 - EX28DRAFT_0916 0.84 -0.9
919,197 + EX28DRAFT_0917 0.15 +1.1
919,197 + EX28DRAFT_0917 0.15 -0.0
919,312 + EX28DRAFT_0917 0.25 -0.4
919,351 + EX28DRAFT_0917 0.29 -0.2
919,430 - EX28DRAFT_0917 0.35 +1.1

Or see this region's nucleotide sequence