Strain Fitness in Enterobacter asburiae PDN3 around EX28DRAFT_0874

Experiment: MS_media with m-arsenite 1 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntEX28DRAFT_0872 and EX28DRAFT_0873 are separated by 14 nucleotidesEX28DRAFT_0873 and EX28DRAFT_0874 are separated by 31 nucleotidesEX28DRAFT_0874 and EX28DRAFT_0875 are separated by 33 nucleotides EX28DRAFT_0872: EX28DRAFT_0872 - oligopeptide/dipeptide ABC transporter, ATP-binding protein, C-terminal domain, at 885,379 to 886,383 _0872 EX28DRAFT_0873: EX28DRAFT_0873 - Kef-type K+ transport systems, predicted NAD-binding component, at 886,398 to 887,267 _0873 EX28DRAFT_0874: EX28DRAFT_0874 - Uncharacterized protein conserved in bacteria, at 887,299 to 887,628 _0874 EX28DRAFT_0875: EX28DRAFT_0875 - cardiolipin synthase, at 887,662 to 889,122 _0875 Position (kb) 887 888Strain fitness (log2 ratio) -5 -4 -3 -2 -1 0 1at 886.314 kb on + strandat 886.380 kb on - strandat 886.380 kb on - strandat 886.466 kb on - strandat 886.585 kb on - strand, within EX28DRAFT_0873at 886.585 kb on - strand, within EX28DRAFT_0873at 886.611 kb on - strand, within EX28DRAFT_0873at 886.675 kb on + strand, within EX28DRAFT_0873at 886.675 kb on + strand, within EX28DRAFT_0873at 886.698 kb on + strand, within EX28DRAFT_0873at 886.749 kb on + strand, within EX28DRAFT_0873at 886.749 kb on + strand, within EX28DRAFT_0873at 886.750 kb on - strand, within EX28DRAFT_0873at 886.750 kb on - strand, within EX28DRAFT_0873at 886.750 kb on - strand, within EX28DRAFT_0873at 886.785 kb on + strand, within EX28DRAFT_0873at 886.785 kb on + strand, within EX28DRAFT_0873at 886.785 kb on + strand, within EX28DRAFT_0873at 886.785 kb on + strand, within EX28DRAFT_0873at 886.786 kb on - strand, within EX28DRAFT_0873at 886.825 kb on + strand, within EX28DRAFT_0873at 886.825 kb on + strand, within EX28DRAFT_0873at 886.830 kb on - strand, within EX28DRAFT_0873at 886.830 kb on - strand, within EX28DRAFT_0873at 886.862 kb on - strand, within EX28DRAFT_0873at 886.923 kb on - strand, within EX28DRAFT_0873at 886.959 kb on + strand, within EX28DRAFT_0873at 886.960 kb on - strand, within EX28DRAFT_0873at 886.964 kb on - strand, within EX28DRAFT_0873at 886.964 kb on - strand, within EX28DRAFT_0873at 886.966 kb on + strand, within EX28DRAFT_0873at 886.967 kb on - strand, within EX28DRAFT_0873at 886.967 kb on - strand, within EX28DRAFT_0873at 887.064 kb on - strand, within EX28DRAFT_0873at 887.139 kb on - strand, within EX28DRAFT_0873at 887.139 kb on - strand, within EX28DRAFT_0873at 887.368 kb on - strand, within EX28DRAFT_0874at 887.515 kb on - strand, within EX28DRAFT_0874at 887.574 kb on - strand, within EX28DRAFT_0874at 887.643 kb on + strandat 887.763 kb on + strandat 887.764 kb on - strandat 887.765 kb on + strandat 887.765 kb on + strandat 887.765 kb on + strandat 887.765 kb on + strandat 887.765 kb on + strandat 887.766 kb on - strandat 887.766 kb on - strandat 887.766 kb on - strandat 887.766 kb on - strandat 888.096 kb on - strand, within EX28DRAFT_0875at 888.096 kb on - strand, within EX28DRAFT_0875at 888.131 kb on + strand, within EX28DRAFT_0875at 888.160 kb on + strand, within EX28DRAFT_0875at 888.195 kb on + strand, within EX28DRAFT_0875at 888.195 kb on + strand, within EX28DRAFT_0875at 888.205 kb on - strand, within EX28DRAFT_0875at 888.231 kb on + strand, within EX28DRAFT_0875at 888.231 kb on + strand, within EX28DRAFT_0875at 888.231 kb on + strand, within EX28DRAFT_0875at 888.235 kb on - strand, within EX28DRAFT_0875at 888.235 kb on - strand, within EX28DRAFT_0875at 888.362 kb on - strand, within EX28DRAFT_0875at 888.425 kb on + strand, within EX28DRAFT_0875at 888.425 kb on + strand, within EX28DRAFT_0875at 888.425 kb on + strand, within EX28DRAFT_0875at 888.425 kb on + strand, within EX28DRAFT_0875at 888.426 kb on - strand, within EX28DRAFT_0875at 888.426 kb on - strand, within EX28DRAFT_0875at 888.426 kb on - strand, within EX28DRAFT_0875at 888.426 kb on - strand, within EX28DRAFT_0875at 888.574 kb on - strand, within EX28DRAFT_0875

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Per-strain Table

Position Strand Gene LocusTag Fraction MS_media with m-arsenite 1 mM
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886,314 + +0.1
886,380 - +0.4
886,380 - -1.7
886,466 - -1.8
886,585 - EX28DRAFT_0873 0.21 -0.8
886,585 - EX28DRAFT_0873 0.21 -1.9
886,611 - EX28DRAFT_0873 0.24 +1.4
886,675 + EX28DRAFT_0873 0.32 +1.1
886,675 + EX28DRAFT_0873 0.32 +0.4
886,698 + EX28DRAFT_0873 0.34 +0.5
886,749 + EX28DRAFT_0873 0.40 -1.7
886,749 + EX28DRAFT_0873 0.40 +0.4
886,750 - EX28DRAFT_0873 0.40 -0.1
886,750 - EX28DRAFT_0873 0.40 +0.2
886,750 - EX28DRAFT_0873 0.40 +0.2
886,785 + EX28DRAFT_0873 0.44 +0.5
886,785 + EX28DRAFT_0873 0.44 -0.4
886,785 + EX28DRAFT_0873 0.44 +0.2
886,785 + EX28DRAFT_0873 0.44 -0.4
886,786 - EX28DRAFT_0873 0.45 +0.4
886,825 + EX28DRAFT_0873 0.49 -1.1
886,825 + EX28DRAFT_0873 0.49 +0.4
886,830 - EX28DRAFT_0873 0.50 +1.2
886,830 - EX28DRAFT_0873 0.50 -0.8
886,862 - EX28DRAFT_0873 0.53 -3.8
886,923 - EX28DRAFT_0873 0.60 -0.4
886,959 + EX28DRAFT_0873 0.64 -0.0
886,960 - EX28DRAFT_0873 0.65 -0.9
886,964 - EX28DRAFT_0873 0.65 -0.5
886,964 - EX28DRAFT_0873 0.65 +1.4
886,966 + EX28DRAFT_0873 0.65 -0.1
886,967 - EX28DRAFT_0873 0.65 +1.5
886,967 - EX28DRAFT_0873 0.65 +0.2
887,064 - EX28DRAFT_0873 0.77 +1.0
887,139 - EX28DRAFT_0873 0.85 +0.6
887,139 - EX28DRAFT_0873 0.85 -0.6
887,368 - EX28DRAFT_0874 0.21 -0.2
887,515 - EX28DRAFT_0874 0.65 -0.9
887,574 - EX28DRAFT_0874 0.83 +0.0
887,643 + -1.3
887,763 + -2.4
887,764 - -1.2
887,765 + -0.4
887,765 + -3.2
887,765 + +0.0
887,765 + -4.0
887,765 + -1.1
887,766 - -1.2
887,766 - -1.2
887,766 - -1.0
887,766 - -0.4
888,096 - EX28DRAFT_0875 0.30 +0.9
888,096 - EX28DRAFT_0875 0.30 -2.6
888,131 + EX28DRAFT_0875 0.32 -1.1
888,160 + EX28DRAFT_0875 0.34 -1.4
888,195 + EX28DRAFT_0875 0.36 -1.5
888,195 + EX28DRAFT_0875 0.36 -2.4
888,205 - EX28DRAFT_0875 0.37 +0.5
888,231 + EX28DRAFT_0875 0.39 +0.5
888,231 + EX28DRAFT_0875 0.39 -0.7
888,231 + EX28DRAFT_0875 0.39 -0.7
888,235 - EX28DRAFT_0875 0.39 -1.4
888,235 - EX28DRAFT_0875 0.39 -2.7
888,362 - EX28DRAFT_0875 0.48 +0.1
888,425 + EX28DRAFT_0875 0.52 -1.1
888,425 + EX28DRAFT_0875 0.52 -5.5
888,425 + EX28DRAFT_0875 0.52 +0.0
888,425 + EX28DRAFT_0875 0.52 -1.5
888,426 - EX28DRAFT_0875 0.52 -0.4
888,426 - EX28DRAFT_0875 0.52 -2.4
888,426 - EX28DRAFT_0875 0.52 -2.3
888,426 - EX28DRAFT_0875 0.52 -0.5
888,574 - EX28DRAFT_0875 0.62 -1.4

Or see this region's nucleotide sequence