Strain Fitness in Enterobacter asburiae PDN3 around EX28DRAFT_0851

Experiment: MS_media with m-arsenite 1 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntEX28DRAFT_0850 and EX28DRAFT_0851 are separated by 381 nucleotidesEX28DRAFT_0851 and EX28DRAFT_0852 overlap by 4 nucleotides EX28DRAFT_0850: EX28DRAFT_0850 - nitrite extrusion protein (nitrite facilitator), at 859,024 to 860,421 _0850 EX28DRAFT_0851: EX28DRAFT_0851 - respiratory nitrate reductase, alpha subunit, at 860,803 to 864,546 _0851 EX28DRAFT_0852: EX28DRAFT_0852 - respiratory nitrate reductase beta subunit, at 864,543 to 866,078 _0852 Position (kb) 860 861 862 863 864 865Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2at 859.810 kb on + strand, within EX28DRAFT_0850at 860.360 kb on - strandat 860.360 kb on - strandat 860.379 kb on + strandat 860.379 kb on + strandat 860.390 kb on + strandat 860.391 kb on - strandat 860.391 kb on - strandat 860.415 kb on + strandat 860.419 kb on + strandat 860.419 kb on + strandat 860.564 kb on - strandat 860.650 kb on + strandat 860.769 kb on + strandat 860.830 kb on + strandat 860.831 kb on - strandat 860.976 kb on + strandat 861.134 kb on - strandat 861.328 kb on + strand, within EX28DRAFT_0851at 861.329 kb on - strand, within EX28DRAFT_0851at 861.343 kb on + strand, within EX28DRAFT_0851at 861.344 kb on - strand, within EX28DRAFT_0851at 861.454 kb on + strand, within EX28DRAFT_0851at 861.454 kb on + strand, within EX28DRAFT_0851at 861.455 kb on - strand, within EX28DRAFT_0851at 861.455 kb on - strand, within EX28DRAFT_0851at 861.455 kb on - strand, within EX28DRAFT_0851at 861.455 kb on - strand, within EX28DRAFT_0851at 861.536 kb on - strand, within EX28DRAFT_0851at 861.537 kb on + strand, within EX28DRAFT_0851at 861.538 kb on - strand, within EX28DRAFT_0851at 861.547 kb on + strand, within EX28DRAFT_0851at 861.547 kb on + strand, within EX28DRAFT_0851at 861.548 kb on - strand, within EX28DRAFT_0851at 861.586 kb on - strand, within EX28DRAFT_0851at 861.765 kb on + strand, within EX28DRAFT_0851at 861.779 kb on - strand, within EX28DRAFT_0851at 861.803 kb on - strand, within EX28DRAFT_0851at 861.850 kb on + strand, within EX28DRAFT_0851at 861.851 kb on - strand, within EX28DRAFT_0851at 861.851 kb on - strand, within EX28DRAFT_0851at 861.851 kb on - strand, within EX28DRAFT_0851at 861.851 kb on - strand, within EX28DRAFT_0851at 861.934 kb on + strand, within EX28DRAFT_0851at 861.934 kb on + strand, within EX28DRAFT_0851at 861.934 kb on + strand, within EX28DRAFT_0851at 861.935 kb on - strand, within EX28DRAFT_0851at 861.936 kb on + strand, within EX28DRAFT_0851at 862.203 kb on + strand, within EX28DRAFT_0851at 862.246 kb on + strand, within EX28DRAFT_0851at 862.247 kb on - strand, within EX28DRAFT_0851at 862.247 kb on - strand, within EX28DRAFT_0851at 862.310 kb on - strand, within EX28DRAFT_0851at 862.357 kb on - strand, within EX28DRAFT_0851at 862.359 kb on + strand, within EX28DRAFT_0851at 862.465 kb on + strand, within EX28DRAFT_0851at 862.534 kb on + strand, within EX28DRAFT_0851at 862.633 kb on + strand, within EX28DRAFT_0851at 862.634 kb on - strand, within EX28DRAFT_0851at 862.639 kb on + strand, within EX28DRAFT_0851at 862.640 kb on - strand, within EX28DRAFT_0851at 862.640 kb on - strand, within EX28DRAFT_0851at 862.640 kb on - strand, within EX28DRAFT_0851at 862.642 kb on - strand, within EX28DRAFT_0851at 862.849 kb on + strand, within EX28DRAFT_0851at 862.981 kb on + strand, within EX28DRAFT_0851at 862.981 kb on + strand, within EX28DRAFT_0851at 862.981 kb on + strand, within EX28DRAFT_0851at 862.982 kb on - strand, within EX28DRAFT_0851at 862.982 kb on - strand, within EX28DRAFT_0851at 863.199 kb on + strand, within EX28DRAFT_0851at 863.200 kb on - strand, within EX28DRAFT_0851at 863.200 kb on - strand, within EX28DRAFT_0851at 863.277 kb on + strand, within EX28DRAFT_0851at 863.460 kb on + strand, within EX28DRAFT_0851at 863.491 kb on + strand, within EX28DRAFT_0851at 863.492 kb on - strand, within EX28DRAFT_0851at 863.492 kb on - strand, within EX28DRAFT_0851at 863.502 kb on + strand, within EX28DRAFT_0851at 863.503 kb on - strand, within EX28DRAFT_0851at 863.599 kb on + strand, within EX28DRAFT_0851at 863.823 kb on + strand, within EX28DRAFT_0851at 863.869 kb on + strand, within EX28DRAFT_0851at 864.106 kb on + strand, within EX28DRAFT_0851at 864.290 kb on - strandat 864.307 kb on - strandat 864.307 kb on - strandat 864.312 kb on + strandat 864.433 kb on + strandat 864.434 kb on - strandat 864.434 kb on - strandat 864.447 kb on - strandat 864.480 kb on + strandat 864.480 kb on + strandat 864.481 kb on - strandat 864.496 kb on - strandat 864.516 kb on + strandat 864.540 kb on - strandat 864.540 kb on - strandat 864.540 kb on - strandat 864.654 kb on + strandat 864.800 kb on + strand, within EX28DRAFT_0852at 864.841 kb on - strand, within EX28DRAFT_0852at 864.843 kb on + strand, within EX28DRAFT_0852at 864.843 kb on + strand, within EX28DRAFT_0852at 865.045 kb on - strand, within EX28DRAFT_0852at 865.061 kb on + strand, within EX28DRAFT_0852at 865.074 kb on + strand, within EX28DRAFT_0852at 865.075 kb on - strand, within EX28DRAFT_0852at 865.144 kb on - strand, within EX28DRAFT_0852at 865.202 kb on + strand, within EX28DRAFT_0852at 865.202 kb on + strand, within EX28DRAFT_0852at 865.203 kb on - strand, within EX28DRAFT_0852at 865.203 kb on - strand, within EX28DRAFT_0852

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Per-strain Table

Position Strand Gene LocusTag Fraction MS_media with m-arsenite 1 mM
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859,810 + EX28DRAFT_0850 0.56 +0.2
860,360 - -0.6
860,360 - -0.4
860,379 + +1.9
860,379 + +1.1
860,390 + +0.4
860,391 - +0.2
860,391 - -1.5
860,415 + +0.7
860,419 + +0.0
860,419 + -1.5
860,564 - +1.0
860,650 + +1.0
860,769 + -0.1
860,830 + +0.9
860,831 - +0.4
860,976 + -0.0
861,134 - +0.9
861,328 + EX28DRAFT_0851 0.14 +0.8
861,329 - EX28DRAFT_0851 0.14 +1.2
861,343 + EX28DRAFT_0851 0.14 +2.5
861,344 - EX28DRAFT_0851 0.14 +1.1
861,454 + EX28DRAFT_0851 0.17 +0.3
861,454 + EX28DRAFT_0851 0.17 -1.1
861,455 - EX28DRAFT_0851 0.17 +0.7
861,455 - EX28DRAFT_0851 0.17 +0.4
861,455 - EX28DRAFT_0851 0.17 +1.7
861,455 - EX28DRAFT_0851 0.17 +0.9
861,536 - EX28DRAFT_0851 0.20 +1.0
861,537 + EX28DRAFT_0851 0.20 +0.9
861,538 - EX28DRAFT_0851 0.20 +0.4
861,547 + EX28DRAFT_0851 0.20 -0.3
861,547 + EX28DRAFT_0851 0.20 +0.9
861,548 - EX28DRAFT_0851 0.20 +1.0
861,586 - EX28DRAFT_0851 0.21 +2.4
861,765 + EX28DRAFT_0851 0.26 +1.5
861,779 - EX28DRAFT_0851 0.26 +0.6
861,803 - EX28DRAFT_0851 0.27 +1.8
861,850 + EX28DRAFT_0851 0.28 +1.9
861,851 - EX28DRAFT_0851 0.28 -0.1
861,851 - EX28DRAFT_0851 0.28 +1.6
861,851 - EX28DRAFT_0851 0.28 +1.0
861,851 - EX28DRAFT_0851 0.28 -0.9
861,934 + EX28DRAFT_0851 0.30 -1.6
861,934 + EX28DRAFT_0851 0.30 +1.6
861,934 + EX28DRAFT_0851 0.30 +0.8
861,935 - EX28DRAFT_0851 0.30 +0.1
861,936 + EX28DRAFT_0851 0.30 +0.3
862,203 + EX28DRAFT_0851 0.37 +0.7
862,246 + EX28DRAFT_0851 0.39 +0.0
862,247 - EX28DRAFT_0851 0.39 +0.6
862,247 - EX28DRAFT_0851 0.39 -0.1
862,310 - EX28DRAFT_0851 0.40 +1.0
862,357 - EX28DRAFT_0851 0.42 +0.9
862,359 + EX28DRAFT_0851 0.42 -0.4
862,465 + EX28DRAFT_0851 0.44 +1.4
862,534 + EX28DRAFT_0851 0.46 +1.0
862,633 + EX28DRAFT_0851 0.49 +0.8
862,634 - EX28DRAFT_0851 0.49 +1.2
862,639 + EX28DRAFT_0851 0.49 +0.5
862,640 - EX28DRAFT_0851 0.49 +1.1
862,640 - EX28DRAFT_0851 0.49 +1.3
862,640 - EX28DRAFT_0851 0.49 +0.1
862,642 - EX28DRAFT_0851 0.49 -2.6
862,849 + EX28DRAFT_0851 0.55 +0.4
862,981 + EX28DRAFT_0851 0.58 +1.9
862,981 + EX28DRAFT_0851 0.58 +0.1
862,981 + EX28DRAFT_0851 0.58 +0.6
862,982 - EX28DRAFT_0851 0.58 +0.8
862,982 - EX28DRAFT_0851 0.58 -1.4
863,199 + EX28DRAFT_0851 0.64 +0.5
863,200 - EX28DRAFT_0851 0.64 +1.2
863,200 - EX28DRAFT_0851 0.64 -0.1
863,277 + EX28DRAFT_0851 0.66 -0.1
863,460 + EX28DRAFT_0851 0.71 +1.6
863,491 + EX28DRAFT_0851 0.72 +0.6
863,492 - EX28DRAFT_0851 0.72 +0.5
863,492 - EX28DRAFT_0851 0.72 +1.3
863,502 + EX28DRAFT_0851 0.72 +1.6
863,503 - EX28DRAFT_0851 0.72 +0.1
863,599 + EX28DRAFT_0851 0.75 +1.0
863,823 + EX28DRAFT_0851 0.81 +0.7
863,869 + EX28DRAFT_0851 0.82 +2.1
864,106 + EX28DRAFT_0851 0.88 -1.7
864,290 - -0.9
864,307 - +1.7
864,307 - +1.0
864,312 + +0.6
864,433 + -0.8
864,434 - -3.7
864,434 - +0.8
864,447 - +1.5
864,480 + -0.3
864,480 + +1.5
864,481 - +0.6
864,496 - +1.1
864,516 + +0.2
864,540 - +0.7
864,540 - +1.2
864,540 - +0.9
864,654 + +0.7
864,800 + EX28DRAFT_0852 0.17 +0.3
864,841 - EX28DRAFT_0852 0.19 -3.9
864,843 + EX28DRAFT_0852 0.20 +0.7
864,843 + EX28DRAFT_0852 0.20 +1.9
865,045 - EX28DRAFT_0852 0.33 +0.6
865,061 + EX28DRAFT_0852 0.34 +0.9
865,074 + EX28DRAFT_0852 0.35 +0.7
865,075 - EX28DRAFT_0852 0.35 -0.2
865,144 - EX28DRAFT_0852 0.39 +1.0
865,202 + EX28DRAFT_0852 0.43 +0.5
865,202 + EX28DRAFT_0852 0.43 +0.5
865,203 - EX28DRAFT_0852 0.43 +0.6
865,203 - EX28DRAFT_0852 0.43 -0.3

Or see this region's nucleotide sequence