Experiment: MS_media with m-arsenite 1 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt EX28DRAFT_0842 and EX28DRAFT_0843 are separated by 2 nucleotides EX28DRAFT_0843 and EX28DRAFT_0844 are separated by 9 nucleotides EX28DRAFT_0844 and EX28DRAFT_0845 are separated by 13 nucleotides
EX28DRAFT_0842: EX28DRAFT_0842 - ABC-type nitrate/sulfonate/bicarbonate transport systems, periplasmic components, at 845,369 to 846,616
_0842
EX28DRAFT_0843: EX28DRAFT_0843 - nitrate ABC transporter, permease protein, at 846,619 to 847,497
_0843
EX28DRAFT_0844: EX28DRAFT_0844 - nitrate transport ATP-binding subunits C and D, at 847,507 to 848,295
_0844
EX28DRAFT_0845: EX28DRAFT_0845 - nitrite reductase [NAD(P)H], large subunit/nitrite reductase [NAD(P)H], small subunit, at 848,309 to 852,295
_0845
Position (kb) 846
847
848 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1 at 845.837 kb on + strand, within EX28DRAFT_0842 at 845.838 kb on - strand, within EX28DRAFT_0842 at 845.885 kb on + strand, within EX28DRAFT_0842 at 845.885 kb on + strand, within EX28DRAFT_0842 at 845.888 kb on + strand, within EX28DRAFT_0842 at 845.889 kb on - strand, within EX28DRAFT_0842 at 846.068 kb on - strand, within EX28DRAFT_0842 at 846.068 kb on - strand, within EX28DRAFT_0842 at 846.257 kb on + strand, within EX28DRAFT_0842 at 846.258 kb on - strand, within EX28DRAFT_0842 at 846.258 kb on - strand, within EX28DRAFT_0842 at 846.363 kb on - strand, within EX28DRAFT_0842 at 846.376 kb on + strand, within EX28DRAFT_0842 at 846.619 kb on - strand at 846.929 kb on + strand, within EX28DRAFT_0843 at 847.043 kb on + strand, within EX28DRAFT_0843 at 847.088 kb on + strand, within EX28DRAFT_0843 at 847.172 kb on + strand, within EX28DRAFT_0843 at 847.479 kb on + strand at 848.234 kb on - strand at 848.426 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction MS_media with m-arsenite 1 mM remove 845,837 + EX28DRAFT_0842 0.38 -0.5 845,838 - EX28DRAFT_0842 0.38 -1.4 845,885 + EX28DRAFT_0842 0.41 +0.8 845,885 + EX28DRAFT_0842 0.41 -0.1 845,888 + EX28DRAFT_0842 0.42 +1.4 845,889 - EX28DRAFT_0842 0.42 +0.8 846,068 - EX28DRAFT_0842 0.56 -3.3 846,068 - EX28DRAFT_0842 0.56 -0.0 846,257 + EX28DRAFT_0842 0.71 -0.5 846,258 - EX28DRAFT_0842 0.71 +0.8 846,258 - EX28DRAFT_0842 0.71 +0.2 846,363 - EX28DRAFT_0842 0.80 -4.0 846,376 + EX28DRAFT_0842 0.81 +0.1 846,619 - +0.9 846,929 + EX28DRAFT_0843 0.35 -0.4 847,043 + EX28DRAFT_0843 0.48 +0.2 847,088 + EX28DRAFT_0843 0.53 -1.3 847,172 + EX28DRAFT_0843 0.63 -3.8 847,479 + +0.9 848,234 - -2.8 848,426 + +1.0
Or see this region's nucleotide sequence