Experiment: MS_media with m-arsenite 1 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt EX28DRAFT_0839 and EX28DRAFT_0840 are separated by 106 nucleotides EX28DRAFT_0840 and EX28DRAFT_0841 are separated by 72 nucleotides EX28DRAFT_0841 and EX28DRAFT_0842 are separated by 228 nucleotides
EX28DRAFT_0839: EX28DRAFT_0839 - Methyl-accepting chemotaxis protein, at 841,639 to 843,423
_0839
EX28DRAFT_0840: EX28DRAFT_0840 - Uncharacterized conserved protein involved in intracellular sulfur reduction, at 843,530 to 843,883
_0840
EX28DRAFT_0841: EX28DRAFT_0841 - ANTAR domain/Nitrate and nitrite sensing, at 843,956 to 845,140
_0841
EX28DRAFT_0842: EX28DRAFT_0842 - ABC-type nitrate/sulfonate/bicarbonate transport systems, periplasmic components, at 845,369 to 846,616
_0842
Position (kb) 843
844
845
846 Strain fitness (log2 ratio) -3
-2
-1
0
1 at 843.046 kb on + strand, within EX28DRAFT_0839 at 843.047 kb on - strand, within EX28DRAFT_0839 at 843.070 kb on - strand, within EX28DRAFT_0839 at 843.080 kb on + strand, within EX28DRAFT_0839 at 843.080 kb on + strand, within EX28DRAFT_0839 at 843.081 kb on - strand, within EX28DRAFT_0839 at 843.140 kb on + strand, within EX28DRAFT_0839 at 843.141 kb on - strand, within EX28DRAFT_0839 at 843.177 kb on + strand, within EX28DRAFT_0839 at 843.271 kb on - strand at 843.423 kb on + strand at 843.423 kb on + strand at 843.475 kb on - strand at 843.509 kb on + strand at 843.597 kb on - strand, within EX28DRAFT_0840 at 843.706 kb on + strand, within EX28DRAFT_0840 at 843.706 kb on + strand, within EX28DRAFT_0840 at 843.709 kb on - strand, within EX28DRAFT_0840 at 843.709 kb on - strand, within EX28DRAFT_0840 at 843.900 kb on - strand at 843.900 kb on - strand at 843.951 kb on + strand at 843.951 kb on + strand at 843.952 kb on - strand at 843.952 kb on - strand at 844.087 kb on + strand, within EX28DRAFT_0841 at 844.088 kb on - strand, within EX28DRAFT_0841 at 844.092 kb on + strand, within EX28DRAFT_0841 at 844.092 kb on + strand, within EX28DRAFT_0841 at 844.145 kb on + strand, within EX28DRAFT_0841 at 844.146 kb on - strand, within EX28DRAFT_0841 at 844.240 kb on + strand, within EX28DRAFT_0841 at 844.240 kb on + strand, within EX28DRAFT_0841 at 844.240 kb on + strand, within EX28DRAFT_0841 at 844.241 kb on - strand, within EX28DRAFT_0841 at 844.283 kb on - strand, within EX28DRAFT_0841 at 844.349 kb on + strand, within EX28DRAFT_0841 at 844.349 kb on + strand, within EX28DRAFT_0841 at 844.807 kb on + strand, within EX28DRAFT_0841 at 844.807 kb on + strand, within EX28DRAFT_0841 at 844.807 kb on + strand, within EX28DRAFT_0841 at 844.807 kb on + strand, within EX28DRAFT_0841 at 844.811 kb on + strand, within EX28DRAFT_0841 at 844.812 kb on - strand, within EX28DRAFT_0841 at 844.812 kb on - strand, within EX28DRAFT_0841 at 844.826 kb on + strand, within EX28DRAFT_0841 at 844.827 kb on - strand, within EX28DRAFT_0841 at 844.863 kb on + strand, within EX28DRAFT_0841 at 844.864 kb on - strand, within EX28DRAFT_0841 at 844.864 kb on - strand, within EX28DRAFT_0841 at 844.868 kb on + strand, within EX28DRAFT_0841 at 844.917 kb on + strand, within EX28DRAFT_0841 at 844.981 kb on + strand, within EX28DRAFT_0841 at 845.015 kb on - strand, within EX28DRAFT_0841 at 845.124 kb on + strand at 845.138 kb on + strand at 845.139 kb on - strand at 845.139 kb on - strand at 845.196 kb on + strand at 845.196 kb on + strand at 845.567 kb on + strand, within EX28DRAFT_0842 at 845.568 kb on - strand, within EX28DRAFT_0842 at 845.568 kb on - strand, within EX28DRAFT_0842 at 845.575 kb on + strand, within EX28DRAFT_0842 at 845.837 kb on + strand, within EX28DRAFT_0842 at 845.838 kb on - strand, within EX28DRAFT_0842 at 845.885 kb on + strand, within EX28DRAFT_0842 at 845.885 kb on + strand, within EX28DRAFT_0842 at 845.888 kb on + strand, within EX28DRAFT_0842 at 845.889 kb on - strand, within EX28DRAFT_0842 at 846.068 kb on - strand, within EX28DRAFT_0842 at 846.068 kb on - strand, within EX28DRAFT_0842
Per-strain Table
Position Strand Gene LocusTag Fraction MS_media with m-arsenite 1 mM remove 843,046 + EX28DRAFT_0839 0.79 -0.5 843,047 - EX28DRAFT_0839 0.79 -0.4 843,070 - EX28DRAFT_0839 0.80 +0.5 843,080 + EX28DRAFT_0839 0.81 +1.6 843,080 + EX28DRAFT_0839 0.81 -0.1 843,081 - EX28DRAFT_0839 0.81 +0.7 843,140 + EX28DRAFT_0839 0.84 +0.8 843,141 - EX28DRAFT_0839 0.84 +0.2 843,177 + EX28DRAFT_0839 0.86 -2.6 843,271 - +0.4 843,423 + -2.9 843,423 + +0.6 843,475 - +0.3 843,509 + +0.5 843,597 - EX28DRAFT_0840 0.19 -3.0 843,706 + EX28DRAFT_0840 0.50 -0.2 843,706 + EX28DRAFT_0840 0.50 +0.1 843,709 - EX28DRAFT_0840 0.51 -0.7 843,709 - EX28DRAFT_0840 0.51 +1.0 843,900 - -0.0 843,900 - -0.2 843,951 + -0.6 843,951 + -0.5 843,952 - -0.7 843,952 - +0.7 844,087 + EX28DRAFT_0841 0.11 +0.5 844,088 - EX28DRAFT_0841 0.11 -0.1 844,092 + EX28DRAFT_0841 0.11 +0.8 844,092 + EX28DRAFT_0841 0.11 -0.1 844,145 + EX28DRAFT_0841 0.16 -0.8 844,146 - EX28DRAFT_0841 0.16 -0.1 844,240 + EX28DRAFT_0841 0.24 +0.2 844,240 + EX28DRAFT_0841 0.24 +1.3 844,240 + EX28DRAFT_0841 0.24 +0.2 844,241 - EX28DRAFT_0841 0.24 +0.2 844,283 - EX28DRAFT_0841 0.28 +0.3 844,349 + EX28DRAFT_0841 0.33 +1.1 844,349 + EX28DRAFT_0841 0.33 -0.9 844,807 + EX28DRAFT_0841 0.72 +0.0 844,807 + EX28DRAFT_0841 0.72 +1.2 844,807 + EX28DRAFT_0841 0.72 +0.7 844,807 + EX28DRAFT_0841 0.72 -0.1 844,811 + EX28DRAFT_0841 0.72 +0.0 844,812 - EX28DRAFT_0841 0.72 +0.5 844,812 - EX28DRAFT_0841 0.72 -0.1 844,826 + EX28DRAFT_0841 0.73 +1.4 844,827 - EX28DRAFT_0841 0.74 -0.6 844,863 + EX28DRAFT_0841 0.77 -3.5 844,864 - EX28DRAFT_0841 0.77 -0.2 844,864 - EX28DRAFT_0841 0.77 -0.2 844,868 + EX28DRAFT_0841 0.77 +0.5 844,917 + EX28DRAFT_0841 0.81 -0.5 844,981 + EX28DRAFT_0841 0.86 +0.4 845,015 - EX28DRAFT_0841 0.89 -0.1 845,124 + -0.9 845,138 + +0.5 845,139 - +0.0 845,139 - -1.7 845,196 + +0.1 845,196 + +0.9 845,567 + EX28DRAFT_0842 0.16 -1.3 845,568 - EX28DRAFT_0842 0.16 -0.4 845,568 - EX28DRAFT_0842 0.16 +0.2 845,575 + EX28DRAFT_0842 0.17 +0.1 845,837 + EX28DRAFT_0842 0.38 -0.5 845,838 - EX28DRAFT_0842 0.38 -1.4 845,885 + EX28DRAFT_0842 0.41 +0.8 845,885 + EX28DRAFT_0842 0.41 -0.1 845,888 + EX28DRAFT_0842 0.42 +1.4 845,889 - EX28DRAFT_0842 0.42 +0.8 846,068 - EX28DRAFT_0842 0.56 -3.3 846,068 - EX28DRAFT_0842 0.56 -0.0
Or see this region's nucleotide sequence