Experiment: MS_media with m-arsenite 1 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt EX28DRAFT_0802 and EX28DRAFT_0803 are separated by 9 nucleotides EX28DRAFT_0803 and EX28DRAFT_0804 overlap by 8 nucleotides EX28DRAFT_0804 and EX28DRAFT_0805 are separated by 2 nucleotides
EX28DRAFT_0802: EX28DRAFT_0802 - hypothetical protein, at 802,161 to 803,159
_0802
EX28DRAFT_0803: EX28DRAFT_0803 - Protein of avirulence locus involved in temperature-dependent protein secretion, at 803,169 to 803,981
_0803
EX28DRAFT_0804: EX28DRAFT_0804 - type VI secretion system lysozyme-like protein, at 803,974 to 804,537
_0804
EX28DRAFT_0805: EX28DRAFT_0805 - type VI secretion protein, VC_A0110 family, at 804,540 to 806,411
_0805
Position (kb) 803
804 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2 at 802.305 kb on - strand, within EX28DRAFT_0802 at 802.418 kb on + strand, within EX28DRAFT_0802 at 802.418 kb on + strand, within EX28DRAFT_0802 at 802.424 kb on + strand, within EX28DRAFT_0802 at 802.425 kb on - strand, within EX28DRAFT_0802 at 802.425 kb on - strand, within EX28DRAFT_0802 at 802.425 kb on - strand, within EX28DRAFT_0802 at 802.803 kb on + strand, within EX28DRAFT_0802 at 802.803 kb on + strand, within EX28DRAFT_0802 at 802.804 kb on - strand, within EX28DRAFT_0802 at 802.804 kb on - strand, within EX28DRAFT_0802 at 802.935 kb on + strand, within EX28DRAFT_0802 at 803.031 kb on - strand, within EX28DRAFT_0802 at 803.174 kb on + strand at 803.174 kb on + strand at 803.174 kb on + strand at 803.174 kb on + strand at 803.568 kb on - strand, within EX28DRAFT_0803 at 803.568 kb on - strand, within EX28DRAFT_0803 at 803.568 kb on - strand, within EX28DRAFT_0803 at 803.881 kb on - strand, within EX28DRAFT_0803 at 804.396 kb on + strand, within EX28DRAFT_0804 at 804.536 kb on - strand at 804.548 kb on + strand at 804.561 kb on + strand at 804.565 kb on - strand at 804.583 kb on - strand at 804.623 kb on + strand at 804.674 kb on + strand at 804.782 kb on + strand, within EX28DRAFT_0805 at 804.786 kb on + strand, within EX28DRAFT_0805 at 804.786 kb on + strand, within EX28DRAFT_0805 at 804.787 kb on - strand, within EX28DRAFT_0805 at 804.787 kb on - strand, within EX28DRAFT_0805 at 804.927 kb on + strand, within EX28DRAFT_0805 at 804.927 kb on + strand, within EX28DRAFT_0805 at 804.927 kb on + strand, within EX28DRAFT_0805 at 804.928 kb on - strand, within EX28DRAFT_0805 at 804.929 kb on + strand, within EX28DRAFT_0805
Per-strain Table
Position Strand Gene LocusTag Fraction MS_media with m-arsenite 1 mM remove 802,305 - EX28DRAFT_0802 0.14 -1.4 802,418 + EX28DRAFT_0802 0.26 +0.9 802,418 + EX28DRAFT_0802 0.26 +2.0 802,424 + EX28DRAFT_0802 0.26 +0.7 802,425 - EX28DRAFT_0802 0.26 +0.3 802,425 - EX28DRAFT_0802 0.26 -0.3 802,425 - EX28DRAFT_0802 0.26 -0.4 802,803 + EX28DRAFT_0802 0.64 -0.1 802,803 + EX28DRAFT_0802 0.64 +0.6 802,804 - EX28DRAFT_0802 0.64 +0.7 802,804 - EX28DRAFT_0802 0.64 -0.2 802,935 + EX28DRAFT_0802 0.77 -0.8 803,031 - EX28DRAFT_0802 0.87 +0.4 803,174 + +1.2 803,174 + -4.2 803,174 + -1.1 803,174 + -0.1 803,568 - EX28DRAFT_0803 0.49 +1.7 803,568 - EX28DRAFT_0803 0.49 +0.6 803,568 - EX28DRAFT_0803 0.49 +1.8 803,881 - EX28DRAFT_0803 0.88 +0.1 804,396 + EX28DRAFT_0804 0.75 -1.1 804,536 - +0.3 804,548 + +1.2 804,561 + -1.0 804,565 - +0.9 804,583 - +0.7 804,623 + -0.4 804,674 + -0.2 804,782 + EX28DRAFT_0805 0.13 +0.0 804,786 + EX28DRAFT_0805 0.13 +0.7 804,786 + EX28DRAFT_0805 0.13 -1.6 804,787 - EX28DRAFT_0805 0.13 -0.2 804,787 - EX28DRAFT_0805 0.13 -1.2 804,927 + EX28DRAFT_0805 0.21 -0.2 804,927 + EX28DRAFT_0805 0.21 +0.3 804,927 + EX28DRAFT_0805 0.21 -0.1 804,928 - EX28DRAFT_0805 0.21 +0.9 804,929 + EX28DRAFT_0805 0.21 -1.4
Or see this region's nucleotide sequence