Strain Fitness in Enterobacter asburiae PDN3 around EX28DRAFT_0728

Experiment: MS_media with m-arsenite 1 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntEX28DRAFT_0727 and EX28DRAFT_0728 are separated by 50 nucleotidesEX28DRAFT_0728 and EX28DRAFT_0729 are separated by 179 nucleotides EX28DRAFT_0727: EX28DRAFT_0727 - Zn-dependent protease with chaperone function, at 726,415 to 727,296 _0727 EX28DRAFT_0728: EX28DRAFT_0728 - Major Facilitator Superfamily, at 727,347 to 728,720 _0728 EX28DRAFT_0729: EX28DRAFT_0729 - transcriptional regulator, IclR family, at 728,900 to 729,691 _0729 Position (kb) 727 728 729Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2at 726.479 kb on + strandat 726.633 kb on + strand, within EX28DRAFT_0727at 726.654 kb on + strand, within EX28DRAFT_0727at 726.654 kb on + strand, within EX28DRAFT_0727at 726.655 kb on - strand, within EX28DRAFT_0727at 727.159 kb on + strand, within EX28DRAFT_0727at 727.159 kb on + strand, within EX28DRAFT_0727at 727.159 kb on + strand, within EX28DRAFT_0727at 727.159 kb on + strand, within EX28DRAFT_0727at 727.233 kb on + strandat 727.233 kb on + strandat 727.234 kb on - strandat 727.234 kb on - strandat 727.234 kb on - strandat 727.234 kb on - strandat 727.260 kb on + strandat 727.285 kb on + strandat 727.294 kb on + strandat 727.295 kb on - strandat 727.740 kb on + strand, within EX28DRAFT_0728at 727.741 kb on - strand, within EX28DRAFT_0728at 727.923 kb on - strand, within EX28DRAFT_0728at 727.923 kb on - strand, within EX28DRAFT_0728at 727.944 kb on + strand, within EX28DRAFT_0728at 728.169 kb on + strand, within EX28DRAFT_0728at 728.196 kb on - strand, within EX28DRAFT_0728at 728.199 kb on - strand, within EX28DRAFT_0728at 728.199 kb on - strand, within EX28DRAFT_0728at 728.246 kb on + strand, within EX28DRAFT_0728at 728.246 kb on + strand, within EX28DRAFT_0728at 728.247 kb on - strand, within EX28DRAFT_0728at 728.406 kb on - strand, within EX28DRAFT_0728at 728.430 kb on + strand, within EX28DRAFT_0728at 728.430 kb on + strand, within EX28DRAFT_0728at 728.471 kb on - strand, within EX28DRAFT_0728at 728.493 kb on - strand, within EX28DRAFT_0728at 728.649 kb on - strandat 728.669 kb on + strandat 728.669 kb on + strandat 728.670 kb on - strandat 728.677 kb on + strandat 728.722 kb on - strandat 728.763 kb on + strandat 728.788 kb on + strandat 728.849 kb on - strandat 728.875 kb on + strandat 728.875 kb on + strandat 728.897 kb on + strandat 728.967 kb on + strandat 728.994 kb on + strand, within EX28DRAFT_0729at 728.998 kb on + strand, within EX28DRAFT_0729at 729.032 kb on - strand, within EX28DRAFT_0729at 729.042 kb on + strand, within EX28DRAFT_0729at 729.043 kb on - strand, within EX28DRAFT_0729at 729.054 kb on + strand, within EX28DRAFT_0729at 729.077 kb on + strand, within EX28DRAFT_0729at 729.257 kb on + strand, within EX28DRAFT_0729at 729.257 kb on + strand, within EX28DRAFT_0729at 729.281 kb on + strand, within EX28DRAFT_0729at 729.281 kb on + strand, within EX28DRAFT_0729at 729.282 kb on - strand, within EX28DRAFT_0729at 729.297 kb on - strand, within EX28DRAFT_0729at 729.556 kb on - strand, within EX28DRAFT_0729at 729.570 kb on + strand, within EX28DRAFT_0729at 729.571 kb on - strand, within EX28DRAFT_0729at 729.575 kb on - strand, within EX28DRAFT_0729at 729.592 kb on - strand, within EX28DRAFT_0729at 729.620 kb on + strandat 729.620 kb on + strandat 729.621 kb on - strandat 729.650 kb on - strandat 729.704 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction MS_media with m-arsenite 1 mM
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726,479 + -0.9
726,633 + EX28DRAFT_0727 0.25 -0.1
726,654 + EX28DRAFT_0727 0.27 +0.3
726,654 + EX28DRAFT_0727 0.27 +0.5
726,655 - EX28DRAFT_0727 0.27 +1.1
727,159 + EX28DRAFT_0727 0.84 +0.3
727,159 + EX28DRAFT_0727 0.84 -1.5
727,159 + EX28DRAFT_0727 0.84 -1.4
727,159 + EX28DRAFT_0727 0.84 +2.1
727,233 + -0.1
727,233 + -1.1
727,234 - -1.1
727,234 - +0.0
727,234 - -0.5
727,234 - -0.8
727,260 + -0.2
727,285 + +0.1
727,294 + -0.1
727,295 - -0.9
727,740 + EX28DRAFT_0728 0.29 -0.2
727,741 - EX28DRAFT_0728 0.29 -2.4
727,923 - EX28DRAFT_0728 0.42 +0.4
727,923 - EX28DRAFT_0728 0.42 -0.9
727,944 + EX28DRAFT_0728 0.43 -1.1
728,169 + EX28DRAFT_0728 0.60 +0.9
728,196 - EX28DRAFT_0728 0.62 -0.5
728,199 - EX28DRAFT_0728 0.62 +2.0
728,199 - EX28DRAFT_0728 0.62 -0.2
728,246 + EX28DRAFT_0728 0.65 -0.3
728,246 + EX28DRAFT_0728 0.65 -1.9
728,247 - EX28DRAFT_0728 0.66 +0.6
728,406 - EX28DRAFT_0728 0.77 -0.6
728,430 + EX28DRAFT_0728 0.79 -0.3
728,430 + EX28DRAFT_0728 0.79 -0.2
728,471 - EX28DRAFT_0728 0.82 +0.5
728,493 - EX28DRAFT_0728 0.83 -0.0
728,649 - -0.4
728,669 + +0.8
728,669 + -0.5
728,670 - +0.1
728,677 + -0.2
728,722 - -0.6
728,763 + +1.6
728,788 + -3.9
728,849 - -0.8
728,875 + +0.2
728,875 + -2.6
728,897 + +1.0
728,967 + -1.6
728,994 + EX28DRAFT_0729 0.12 -0.3
728,998 + EX28DRAFT_0729 0.12 -0.8
729,032 - EX28DRAFT_0729 0.17 +0.0
729,042 + EX28DRAFT_0729 0.18 -1.4
729,043 - EX28DRAFT_0729 0.18 -1.8
729,054 + EX28DRAFT_0729 0.19 -0.0
729,077 + EX28DRAFT_0729 0.22 +1.2
729,257 + EX28DRAFT_0729 0.45 -4.1
729,257 + EX28DRAFT_0729 0.45 -3.0
729,281 + EX28DRAFT_0729 0.48 -0.2
729,281 + EX28DRAFT_0729 0.48 -2.3
729,282 - EX28DRAFT_0729 0.48 -0.4
729,297 - EX28DRAFT_0729 0.50 -2.0
729,556 - EX28DRAFT_0729 0.83 -0.2
729,570 + EX28DRAFT_0729 0.85 -2.4
729,571 - EX28DRAFT_0729 0.85 +0.2
729,575 - EX28DRAFT_0729 0.85 +0.3
729,592 - EX28DRAFT_0729 0.87 +0.0
729,620 + -0.4
729,620 + -0.5
729,621 - -1.6
729,650 - -1.8
729,704 + +0.9

Or see this region's nucleotide sequence