Experiment: MS_media with m-arsenite 1 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt EX28DRAFT_0711 and EX28DRAFT_0712 are separated by 110 nucleotides EX28DRAFT_0712 and EX28DRAFT_0713 are separated by 136 nucleotides EX28DRAFT_0713 and EX28DRAFT_0714 are separated by 1 nucleotides EX28DRAFT_0714 and EX28DRAFT_0715 are separated by 16 nucleotides EX28DRAFT_0715 and EX28DRAFT_0716 are separated by 101 nucleotides EX28DRAFT_0716 and EX28DRAFT_0717 are separated by 193 nucleotides
EX28DRAFT_0711: EX28DRAFT_0711 - Predicted amidohydrolase, at 710,967 to 711,617
_0711
EX28DRAFT_0712: EX28DRAFT_0712 - DNA polymerase III, theta subunit, at 711,728 to 711,958
_0712
EX28DRAFT_0713: EX28DRAFT_0713 - Uncharacterized protein, homolog of Cu resistance protein CopC, at 712,095 to 712,466
_0713
EX28DRAFT_0714: EX28DRAFT_0714 - Putative copper export protein, at 712,468 to 713,337
_0714
EX28DRAFT_0715: EX28DRAFT_0715 - Protein of unknown function (DUF2511), at 713,354 to 713,692
_0715
EX28DRAFT_0716: EX28DRAFT_0716 - RNA, at 713,794 to 713,938
_0716
EX28DRAFT_0717: EX28DRAFT_0717 - Glycosyltransferase family 17, at 714,132 to 715,028
_0717
Position (kb) 712
713
714 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2 at 711.552 kb on - strand, within EX28DRAFT_0711 at 711.552 kb on - strand, within EX28DRAFT_0711 at 711.565 kb on - strand at 711.565 kb on - strand at 711.587 kb on - strand at 711.587 kb on - strand at 711.601 kb on - strand at 711.629 kb on + strand at 711.631 kb on + strand at 711.631 kb on + strand at 711.631 kb on + strand at 711.652 kb on - strand at 711.657 kb on + strand at 711.658 kb on - strand at 711.729 kb on + strand at 711.730 kb on - strand at 711.747 kb on + strand at 711.867 kb on + strand, within EX28DRAFT_0712 at 711.868 kb on - strand, within EX28DRAFT_0712 at 711.960 kb on - strand at 712.018 kb on - strand at 712.042 kb on + strand at 712.068 kb on - strand at 712.121 kb on - strand at 712.121 kb on - strand at 712.121 kb on - strand at 712.236 kb on - strand, within EX28DRAFT_0713 at 712.236 kb on - strand, within EX28DRAFT_0713 at 712.236 kb on - strand, within EX28DRAFT_0713 at 712.430 kb on + strand at 712.431 kb on - strand at 712.447 kb on - strand at 712.464 kb on + strand at 712.464 kb on + strand at 712.465 kb on - strand at 712.483 kb on + strand at 712.501 kb on - strand at 712.911 kb on + strand, within EX28DRAFT_0714 at 712.911 kb on + strand, within EX28DRAFT_0714 at 712.912 kb on - strand, within EX28DRAFT_0714 at 712.916 kb on - strand, within EX28DRAFT_0714 at 713.085 kb on - strand, within EX28DRAFT_0714 at 713.099 kb on + strand, within EX28DRAFT_0714 at 713.181 kb on - strand, within EX28DRAFT_0714 at 713.344 kb on + strand at 713.345 kb on - strand at 713.348 kb on + strand at 713.348 kb on + strand at 713.348 kb on + strand at 713.348 kb on + strand at 713.349 kb on - strand at 713.349 kb on - strand at 713.368 kb on - strand at 713.379 kb on + strand at 713.513 kb on + strand, within EX28DRAFT_0715 at 713.611 kb on + strand, within EX28DRAFT_0715 at 713.611 kb on + strand, within EX28DRAFT_0715 at 713.753 kb on + strand at 713.753 kb on + strand at 713.754 kb on - strand at 713.821 kb on - strand, within EX28DRAFT_0716 at 713.843 kb on + strand, within EX28DRAFT_0716 at 713.941 kb on - strand at 713.974 kb on - strand at 714.025 kb on + strand at 714.025 kb on + strand at 714.025 kb on + strand at 714.026 kb on - strand at 714.129 kb on - strand at 714.129 kb on - strand at 714.129 kb on - strand at 714.129 kb on - strand at 714.133 kb on + strand at 714.133 kb on + strand at 714.176 kb on - strand at 714.176 kb on - strand at 714.313 kb on - strand, within EX28DRAFT_0717
Per-strain Table
Position Strand Gene LocusTag Fraction MS_media with m-arsenite 1 mM remove 711,552 - EX28DRAFT_0711 0.90 +1.1 711,552 - EX28DRAFT_0711 0.90 -0.5 711,565 - -0.2 711,565 - -0.2 711,587 - -0.4 711,587 - -0.1 711,601 - -0.8 711,629 + +0.2 711,631 + -0.5 711,631 + +0.1 711,631 + -0.5 711,652 - +0.5 711,657 + -0.4 711,658 - -0.2 711,729 + -1.9 711,730 - -2.0 711,747 + -0.6 711,867 + EX28DRAFT_0712 0.60 +0.6 711,868 - EX28DRAFT_0712 0.61 -0.0 711,960 - -0.3 712,018 - +1.7 712,042 + +0.1 712,068 - +0.8 712,121 - +1.9 712,121 - +1.9 712,121 - +1.4 712,236 - EX28DRAFT_0713 0.38 +0.0 712,236 - EX28DRAFT_0713 0.38 +0.0 712,236 - EX28DRAFT_0713 0.38 -2.6 712,430 + -0.8 712,431 - -0.9 712,447 - +1.7 712,464 + -1.4 712,464 + -0.3 712,465 - +1.7 712,483 + -0.6 712,501 - +0.7 712,911 + EX28DRAFT_0714 0.51 +0.5 712,911 + EX28DRAFT_0714 0.51 +1.4 712,912 - EX28DRAFT_0714 0.51 -0.1 712,916 - EX28DRAFT_0714 0.51 -0.8 713,085 - EX28DRAFT_0714 0.71 +0.3 713,099 + EX28DRAFT_0714 0.73 -0.0 713,181 - EX28DRAFT_0714 0.82 -0.5 713,344 + -1.7 713,345 - +0.3 713,348 + -1.4 713,348 + -3.9 713,348 + -0.2 713,348 + +1.1 713,349 - +0.5 713,349 - +0.8 713,368 - -0.5 713,379 + -1.5 713,513 + EX28DRAFT_0715 0.47 +0.4 713,611 + EX28DRAFT_0715 0.76 +1.6 713,611 + EX28DRAFT_0715 0.76 +0.1 713,753 + -0.1 713,753 + -0.3 713,754 - -0.5 713,821 - EX28DRAFT_0716 0.19 +0.5 713,843 + EX28DRAFT_0716 0.34 -0.5 713,941 - +0.3 713,974 - +0.3 714,025 + -3.1 714,025 + +0.2 714,025 + +0.4 714,026 - +0.6 714,129 - -0.1 714,129 - -0.9 714,129 - -0.1 714,129 - +0.9 714,133 + +0.5 714,133 + +0.1 714,176 - -1.0 714,176 - -0.4 714,313 - EX28DRAFT_0717 0.20 -2.8
Or see this region's nucleotide sequence