Strain Fitness in Enterobacter asburiae PDN3 around EX28DRAFT_0710

Experiment: MS_media with m-arsenite 1 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntEX28DRAFT_0709 and EX28DRAFT_0710 overlap by 4 nucleotidesEX28DRAFT_0710 and EX28DRAFT_0711 are separated by 24 nucleotidesEX28DRAFT_0711 and EX28DRAFT_0712 are separated by 110 nucleotides EX28DRAFT_0709: EX28DRAFT_0709 - Protease II, at 708,223 to 710,283 _0709 EX28DRAFT_0710: EX28DRAFT_0710 - DNA polymerase III, epsilon subunit and related 3'-5' exonucleases, at 710,280 to 710,942 _0710 EX28DRAFT_0711: EX28DRAFT_0711 - Predicted amidohydrolase, at 710,967 to 711,617 _0711 EX28DRAFT_0712: EX28DRAFT_0712 - DNA polymerase III, theta subunit, at 711,728 to 711,958 _0712 Position (kb) 710 711Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 709.440 kb on - strand, within EX28DRAFT_0709at 709.585 kb on + strand, within EX28DRAFT_0709at 709.585 kb on + strand, within EX28DRAFT_0709at 709.625 kb on + strand, within EX28DRAFT_0709at 709.984 kb on + strand, within EX28DRAFT_0709at 709.984 kb on + strand, within EX28DRAFT_0709at 709.984 kb on + strand, within EX28DRAFT_0709at 709.985 kb on - strand, within EX28DRAFT_0709at 709.994 kb on - strand, within EX28DRAFT_0709at 710.047 kb on - strand, within EX28DRAFT_0709at 710.086 kb on + strandat 710.207 kb on - strandat 710.237 kb on + strandat 710.238 kb on - strandat 710.297 kb on - strandat 710.297 kb on - strandat 710.347 kb on + strand, within EX28DRAFT_0710at 710.348 kb on - strand, within EX28DRAFT_0710at 710.348 kb on - strand, within EX28DRAFT_0710at 710.358 kb on + strand, within EX28DRAFT_0710at 710.359 kb on - strand, within EX28DRAFT_0710at 710.359 kb on - strand, within EX28DRAFT_0710at 710.363 kb on - strand, within EX28DRAFT_0710at 710.420 kb on + strand, within EX28DRAFT_0710at 710.486 kb on + strand, within EX28DRAFT_0710at 710.486 kb on + strand, within EX28DRAFT_0710at 710.486 kb on + strand, within EX28DRAFT_0710at 710.487 kb on - strand, within EX28DRAFT_0710at 710.520 kb on - strand, within EX28DRAFT_0710at 710.521 kb on + strand, within EX28DRAFT_0710at 710.521 kb on + strand, within EX28DRAFT_0710at 710.522 kb on - strand, within EX28DRAFT_0710at 710.522 kb on - strand, within EX28DRAFT_0710at 710.522 kb on - strand, within EX28DRAFT_0710at 710.522 kb on - strand, within EX28DRAFT_0710at 710.531 kb on - strand, within EX28DRAFT_0710at 710.591 kb on - strand, within EX28DRAFT_0710at 710.612 kb on + strand, within EX28DRAFT_0710at 710.713 kb on + strand, within EX28DRAFT_0710at 710.728 kb on + strand, within EX28DRAFT_0710at 710.728 kb on + strand, within EX28DRAFT_0710at 710.728 kb on + strand, within EX28DRAFT_0710at 710.729 kb on - strand, within EX28DRAFT_0710at 710.731 kb on + strand, within EX28DRAFT_0710at 710.732 kb on - strand, within EX28DRAFT_0710at 710.732 kb on - strand, within EX28DRAFT_0710at 710.895 kb on + strandat 710.974 kb on - strandat 711.121 kb on + strand, within EX28DRAFT_0711at 711.121 kb on + strand, within EX28DRAFT_0711at 711.122 kb on - strand, within EX28DRAFT_0711at 711.122 kb on - strand, within EX28DRAFT_0711at 711.122 kb on - strand, within EX28DRAFT_0711at 711.125 kb on + strand, within EX28DRAFT_0711at 711.126 kb on - strand, within EX28DRAFT_0711at 711.252 kb on - strand, within EX28DRAFT_0711at 711.252 kb on - strand, within EX28DRAFT_0711at 711.399 kb on + strand, within EX28DRAFT_0711at 711.453 kb on + strand, within EX28DRAFT_0711at 711.552 kb on - strand, within EX28DRAFT_0711at 711.552 kb on - strand, within EX28DRAFT_0711at 711.565 kb on - strandat 711.565 kb on - strandat 711.587 kb on - strandat 711.587 kb on - strandat 711.601 kb on - strandat 711.629 kb on + strandat 711.631 kb on + strandat 711.631 kb on + strandat 711.631 kb on + strandat 711.652 kb on - strandat 711.657 kb on + strandat 711.658 kb on - strandat 711.729 kb on + strandat 711.730 kb on - strandat 711.747 kb on + strandat 711.867 kb on + strand, within EX28DRAFT_0712at 711.868 kb on - strand, within EX28DRAFT_0712

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Per-strain Table

Position Strand Gene LocusTag Fraction MS_media with m-arsenite 1 mM
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709,440 - EX28DRAFT_0709 0.59 -2.5
709,585 + EX28DRAFT_0709 0.66 -0.0
709,585 + EX28DRAFT_0709 0.66 +0.6
709,625 + EX28DRAFT_0709 0.68 +0.4
709,984 + EX28DRAFT_0709 0.85 -1.5
709,984 + EX28DRAFT_0709 0.85 -0.6
709,984 + EX28DRAFT_0709 0.85 -3.1
709,985 - EX28DRAFT_0709 0.85 +0.0
709,994 - EX28DRAFT_0709 0.86 -0.5
710,047 - EX28DRAFT_0709 0.89 -1.3
710,086 + -0.4
710,207 - -3.5
710,237 + -0.5
710,238 - -0.3
710,297 - -2.5
710,297 - -2.1
710,347 + EX28DRAFT_0710 0.10 -0.8
710,348 - EX28DRAFT_0710 0.10 +0.2
710,348 - EX28DRAFT_0710 0.10 -1.4
710,358 + EX28DRAFT_0710 0.12 -0.2
710,359 - EX28DRAFT_0710 0.12 -0.3
710,359 - EX28DRAFT_0710 0.12 +0.0
710,363 - EX28DRAFT_0710 0.13 +0.0
710,420 + EX28DRAFT_0710 0.21 +0.5
710,486 + EX28DRAFT_0710 0.31 -2.1
710,486 + EX28DRAFT_0710 0.31 -0.6
710,486 + EX28DRAFT_0710 0.31 +1.0
710,487 - EX28DRAFT_0710 0.31 -1.4
710,520 - EX28DRAFT_0710 0.36 -0.4
710,521 + EX28DRAFT_0710 0.36 -1.5
710,521 + EX28DRAFT_0710 0.36 +3.3
710,522 - EX28DRAFT_0710 0.37 -1.4
710,522 - EX28DRAFT_0710 0.37 +1.0
710,522 - EX28DRAFT_0710 0.37 -0.2
710,522 - EX28DRAFT_0710 0.37 -3.2
710,531 - EX28DRAFT_0710 0.38 -0.4
710,591 - EX28DRAFT_0710 0.47 +0.6
710,612 + EX28DRAFT_0710 0.50 -0.2
710,713 + EX28DRAFT_0710 0.65 -0.2
710,728 + EX28DRAFT_0710 0.68 -1.1
710,728 + EX28DRAFT_0710 0.68 -2.1
710,728 + EX28DRAFT_0710 0.68 +0.2
710,729 - EX28DRAFT_0710 0.68 -0.3
710,731 + EX28DRAFT_0710 0.68 -3.4
710,732 - EX28DRAFT_0710 0.68 +2.2
710,732 - EX28DRAFT_0710 0.68 -0.6
710,895 + +0.8
710,974 - +0.4
711,121 + EX28DRAFT_0711 0.24 +1.2
711,121 + EX28DRAFT_0711 0.24 -0.3
711,122 - EX28DRAFT_0711 0.24 -0.1
711,122 - EX28DRAFT_0711 0.24 +1.1
711,122 - EX28DRAFT_0711 0.24 -0.2
711,125 + EX28DRAFT_0711 0.24 -2.2
711,126 - EX28DRAFT_0711 0.24 -3.1
711,252 - EX28DRAFT_0711 0.44 +1.4
711,252 - EX28DRAFT_0711 0.44 +0.2
711,399 + EX28DRAFT_0711 0.66 -0.8
711,453 + EX28DRAFT_0711 0.75 -0.1
711,552 - EX28DRAFT_0711 0.90 +1.1
711,552 - EX28DRAFT_0711 0.90 -0.5
711,565 - -0.2
711,565 - -0.2
711,587 - -0.4
711,587 - -0.1
711,601 - -0.8
711,629 + +0.2
711,631 + -0.5
711,631 + +0.1
711,631 + -0.5
711,652 - +0.5
711,657 + -0.4
711,658 - -0.2
711,729 + -1.9
711,730 - -2.0
711,747 + -0.6
711,867 + EX28DRAFT_0712 0.60 +0.6
711,868 - EX28DRAFT_0712 0.61 -0.0

Or see this region's nucleotide sequence