Experiment: MS_media with m-arsenite 1 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt EX28DRAFT_0705 and EX28DRAFT_0706 are separated by 39 nucleotides EX28DRAFT_0706 and EX28DRAFT_0707 are separated by 42 nucleotides
EX28DRAFT_0705: EX28DRAFT_0705 - 6-phosphogluconate dehydratase (EC 4.2.1.12), at 703,606 to 705,417
_0705
EX28DRAFT_0706: EX28DRAFT_0706 - Entner-Doudoroff aldolase, at 705,457 to 706,098
_0706
EX28DRAFT_0707: EX28DRAFT_0707 - formate-dependent phosphoribosylglycinamide formyltransferase (EC 6.3.4.-), at 706,141 to 707,319
_0707
Position (kb) 705
706
707 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3
4 at 704.560 kb on - strand, within EX28DRAFT_0705 at 704.591 kb on + strand, within EX28DRAFT_0705 at 704.975 kb on + strand, within EX28DRAFT_0705 at 704.975 kb on + strand, within EX28DRAFT_0705 at 704.975 kb on + strand, within EX28DRAFT_0705 at 704.976 kb on - strand, within EX28DRAFT_0705 at 704.976 kb on - strand, within EX28DRAFT_0705 at 705.043 kb on - strand, within EX28DRAFT_0705 at 705.065 kb on + strand, within EX28DRAFT_0705 at 705.066 kb on - strand, within EX28DRAFT_0705 at 705.070 kb on - strand, within EX28DRAFT_0705 at 705.075 kb on + strand, within EX28DRAFT_0705 at 705.075 kb on + strand, within EX28DRAFT_0705 at 705.076 kb on - strand, within EX28DRAFT_0705 at 705.194 kb on - strand, within EX28DRAFT_0705 at 705.263 kb on + strand at 705.264 kb on - strand at 705.310 kb on - strand at 705.405 kb on + strand at 705.406 kb on - strand at 705.408 kb on + strand at 705.415 kb on + strand at 705.431 kb on + strand at 705.431 kb on + strand at 705.545 kb on + strand, within EX28DRAFT_0706 at 705.923 kb on + strand, within EX28DRAFT_0706 at 705.962 kb on - strand, within EX28DRAFT_0706 at 706.097 kb on - strand at 706.270 kb on + strand, within EX28DRAFT_0707 at 706.270 kb on + strand, within EX28DRAFT_0707 at 706.409 kb on - strand, within EX28DRAFT_0707 at 706.818 kb on + strand, within EX28DRAFT_0707 at 706.819 kb on - strand, within EX28DRAFT_0707
Per-strain Table
Position Strand Gene LocusTag Fraction MS_media with m-arsenite 1 mM remove 704,560 - EX28DRAFT_0705 0.53 +0.7 704,591 + EX28DRAFT_0705 0.54 -0.9 704,975 + EX28DRAFT_0705 0.76 +0.1 704,975 + EX28DRAFT_0705 0.76 +0.5 704,975 + EX28DRAFT_0705 0.76 +0.4 704,976 - EX28DRAFT_0705 0.76 +0.1 704,976 - EX28DRAFT_0705 0.76 +0.0 705,043 - EX28DRAFT_0705 0.79 -1.2 705,065 + EX28DRAFT_0705 0.81 +1.0 705,066 - EX28DRAFT_0705 0.81 -2.0 705,070 - EX28DRAFT_0705 0.81 -0.6 705,075 + EX28DRAFT_0705 0.81 +0.2 705,075 + EX28DRAFT_0705 0.81 -0.1 705,076 - EX28DRAFT_0705 0.81 -0.3 705,194 - EX28DRAFT_0705 0.88 +0.3 705,263 + -0.0 705,264 - +0.1 705,310 - -0.2 705,405 + +0.2 705,406 - -1.7 705,408 + -0.2 705,415 + +0.0 705,431 + +4.3 705,431 + -0.1 705,545 + EX28DRAFT_0706 0.14 -2.6 705,923 + EX28DRAFT_0706 0.73 -3.6 705,962 - EX28DRAFT_0706 0.79 -0.6 706,097 - +0.4 706,270 + EX28DRAFT_0707 0.11 -0.1 706,270 + EX28DRAFT_0707 0.11 -0.0 706,409 - EX28DRAFT_0707 0.23 -0.2 706,818 + EX28DRAFT_0707 0.57 +0.5 706,819 - EX28DRAFT_0707 0.58 +0.1
Or see this region's nucleotide sequence