Strain Fitness in Enterobacter asburiae PDN3 around EX28DRAFT_0611

Experiment: MS_media with m-arsenite 1 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntEX28DRAFT_0609 and EX28DRAFT_0610 are separated by 4 nucleotidesEX28DRAFT_0610 and EX28DRAFT_0611 are separated by 106 nucleotidesEX28DRAFT_0611 and EX28DRAFT_0612 overlap by 4 nucleotidesEX28DRAFT_0612 and EX28DRAFT_0613 are separated by 21 nucleotides EX28DRAFT_0609: EX28DRAFT_0609 - flagellar motor switch protein FliM, at 607,412 to 608,416 _0609 EX28DRAFT_0610: EX28DRAFT_0610 - Flagellar basal body-associated protein, at 608,421 to 608,891 _0610 EX28DRAFT_0611: EX28DRAFT_0611 - Flagellar hook-length control protein, at 608,998 to 610,233 _0611 EX28DRAFT_0612: EX28DRAFT_0612 - flagellar export protein FliJ, at 610,230 to 610,673 _0612 EX28DRAFT_0613: EX28DRAFT_0613 - flagellar protein export ATPase FliI, at 610,695 to 612,065 _0613 Position (kb) 608 609 610 611Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2at 608.179 kb on + strand, within EX28DRAFT_0609at 608.180 kb on - strand, within EX28DRAFT_0609at 608.219 kb on - strand, within EX28DRAFT_0609at 608.276 kb on + strand, within EX28DRAFT_0609at 608.276 kb on + strand, within EX28DRAFT_0609at 608.277 kb on - strand, within EX28DRAFT_0609at 608.277 kb on - strand, within EX28DRAFT_0609at 608.312 kb on + strand, within EX28DRAFT_0609at 608.312 kb on + strand, within EX28DRAFT_0609at 608.312 kb on + strand, within EX28DRAFT_0609at 608.312 kb on + strand, within EX28DRAFT_0609at 608.312 kb on + strand, within EX28DRAFT_0609at 608.313 kb on - strand, within EX28DRAFT_0609at 608.313 kb on - strand, within EX28DRAFT_0609at 608.315 kb on - strand, within EX28DRAFT_0609at 608.317 kb on - strandat 608.404 kb on + strandat 608.405 kb on - strandat 608.441 kb on + strandat 608.442 kb on - strandat 608.442 kb on - strandat 608.442 kb on - strandat 608.442 kb on - strandat 608.443 kb on + strandat 608.468 kb on + strand, within EX28DRAFT_0610at 608.468 kb on + strand, within EX28DRAFT_0610at 608.468 kb on + strand, within EX28DRAFT_0610at 608.468 kb on + strand, within EX28DRAFT_0610at 608.468 kb on + strand, within EX28DRAFT_0610at 608.608 kb on + strand, within EX28DRAFT_0610at 608.608 kb on + strand, within EX28DRAFT_0610at 608.608 kb on + strand, within EX28DRAFT_0610at 608.655 kb on - strand, within EX28DRAFT_0610at 608.665 kb on + strand, within EX28DRAFT_0610at 608.666 kb on - strand, within EX28DRAFT_0610at 608.666 kb on - strand, within EX28DRAFT_0610at 608.705 kb on + strand, within EX28DRAFT_0610at 608.783 kb on + strand, within EX28DRAFT_0610at 608.784 kb on - strand, within EX28DRAFT_0610at 608.784 kb on - strand, within EX28DRAFT_0610at 608.795 kb on + strand, within EX28DRAFT_0610at 608.795 kb on + strand, within EX28DRAFT_0610at 608.796 kb on - strand, within EX28DRAFT_0610at 608.796 kb on - strand, within EX28DRAFT_0610at 608.796 kb on - strand, within EX28DRAFT_0610at 608.797 kb on + strand, within EX28DRAFT_0610at 608.797 kb on + strand, within EX28DRAFT_0610at 608.798 kb on - strand, within EX28DRAFT_0610at 608.922 kb on + strandat 608.922 kb on + strandat 608.922 kb on + strandat 608.922 kb on + strandat 608.923 kb on - strandat 608.923 kb on - strandat 608.923 kb on - strandat 608.923 kb on - strandat 608.925 kb on + strandat 608.926 kb on - strandat 609.014 kb on - strandat 609.372 kb on + strand, within EX28DRAFT_0611at 609.493 kb on - strand, within EX28DRAFT_0611at 609.507 kb on + strand, within EX28DRAFT_0611at 609.507 kb on + strand, within EX28DRAFT_0611at 609.508 kb on - strand, within EX28DRAFT_0611at 609.508 kb on - strand, within EX28DRAFT_0611at 609.579 kb on + strand, within EX28DRAFT_0611at 609.640 kb on - strand, within EX28DRAFT_0611at 609.654 kb on + strand, within EX28DRAFT_0611at 609.654 kb on + strand, within EX28DRAFT_0611at 609.654 kb on + strand, within EX28DRAFT_0611at 609.774 kb on + strand, within EX28DRAFT_0611at 609.849 kb on + strand, within EX28DRAFT_0611at 609.900 kb on + strand, within EX28DRAFT_0611at 609.931 kb on - strand, within EX28DRAFT_0611at 610.332 kb on + strand, within EX28DRAFT_0612at 610.332 kb on + strand, within EX28DRAFT_0612at 610.469 kb on - strand, within EX28DRAFT_0612at 610.469 kb on - strand, within EX28DRAFT_0612at 610.473 kb on - strand, within EX28DRAFT_0612at 610.473 kb on - strand, within EX28DRAFT_0612at 610.599 kb on + strand, within EX28DRAFT_0612at 610.696 kb on + strandat 610.696 kb on + strandat 610.697 kb on - strandat 610.926 kb on + strand, within EX28DRAFT_0613at 611.015 kb on + strand, within EX28DRAFT_0613at 611.015 kb on + strand, within EX28DRAFT_0613at 611.015 kb on + strand, within EX28DRAFT_0613at 611.016 kb on - strand, within EX28DRAFT_0613at 611.016 kb on - strand, within EX28DRAFT_0613at 611.082 kb on + strand, within EX28DRAFT_0613at 611.082 kb on + strand, within EX28DRAFT_0613at 611.087 kb on + strand, within EX28DRAFT_0613at 611.089 kb on + strand, within EX28DRAFT_0613at 611.090 kb on - strand, within EX28DRAFT_0613

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Per-strain Table

Position Strand Gene LocusTag Fraction MS_media with m-arsenite 1 mM
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608,179 + EX28DRAFT_0609 0.76 -0.1
608,180 - EX28DRAFT_0609 0.76 -0.1
608,219 - EX28DRAFT_0609 0.80 -4.3
608,276 + EX28DRAFT_0609 0.86 +0.1
608,276 + EX28DRAFT_0609 0.86 +0.9
608,277 - EX28DRAFT_0609 0.86 -0.7
608,277 - EX28DRAFT_0609 0.86 -1.1
608,312 + EX28DRAFT_0609 0.90 -1.4
608,312 + EX28DRAFT_0609 0.90 +0.7
608,312 + EX28DRAFT_0609 0.90 -0.4
608,312 + EX28DRAFT_0609 0.90 -1.2
608,312 + EX28DRAFT_0609 0.90 -1.0
608,313 - EX28DRAFT_0609 0.90 -0.8
608,313 - EX28DRAFT_0609 0.90 -0.8
608,315 - EX28DRAFT_0609 0.90 +0.3
608,317 - -0.2
608,404 + +0.3
608,405 - +1.1
608,441 + +0.1
608,442 - -1.1
608,442 - -0.8
608,442 - -1.2
608,442 - -0.4
608,443 + -0.1
608,468 + EX28DRAFT_0610 0.10 -0.2
608,468 + EX28DRAFT_0610 0.10 -1.1
608,468 + EX28DRAFT_0610 0.10 +0.3
608,468 + EX28DRAFT_0610 0.10 -2.1
608,468 + EX28DRAFT_0610 0.10 -1.2
608,608 + EX28DRAFT_0610 0.40 +0.1
608,608 + EX28DRAFT_0610 0.40 +0.8
608,608 + EX28DRAFT_0610 0.40 +0.8
608,655 - EX28DRAFT_0610 0.50 +0.1
608,665 + EX28DRAFT_0610 0.52 +0.6
608,666 - EX28DRAFT_0610 0.52 -0.0
608,666 - EX28DRAFT_0610 0.52 -0.1
608,705 + EX28DRAFT_0610 0.60 +0.3
608,783 + EX28DRAFT_0610 0.77 +0.6
608,784 - EX28DRAFT_0610 0.77 +0.4
608,784 - EX28DRAFT_0610 0.77 +0.5
608,795 + EX28DRAFT_0610 0.79 +0.2
608,795 + EX28DRAFT_0610 0.79 +0.8
608,796 - EX28DRAFT_0610 0.80 +0.1
608,796 - EX28DRAFT_0610 0.80 -3.3
608,796 - EX28DRAFT_0610 0.80 +0.9
608,797 + EX28DRAFT_0610 0.80 +0.2
608,797 + EX28DRAFT_0610 0.80 +0.1
608,798 - EX28DRAFT_0610 0.80 +0.5
608,922 + +0.8
608,922 + +0.9
608,922 + +0.8
608,922 + +1.1
608,923 - +0.3
608,923 - +0.3
608,923 - -0.6
608,923 - +0.8
608,925 + +0.7
608,926 - +0.7
609,014 - +0.3
609,372 + EX28DRAFT_0611 0.30 +0.4
609,493 - EX28DRAFT_0611 0.40 +1.3
609,507 + EX28DRAFT_0611 0.41 +0.5
609,507 + EX28DRAFT_0611 0.41 -0.4
609,508 - EX28DRAFT_0611 0.41 +0.2
609,508 - EX28DRAFT_0611 0.41 -1.0
609,579 + EX28DRAFT_0611 0.47 +0.8
609,640 - EX28DRAFT_0611 0.52 -0.4
609,654 + EX28DRAFT_0611 0.53 +0.8
609,654 + EX28DRAFT_0611 0.53 -0.3
609,654 + EX28DRAFT_0611 0.53 -0.0
609,774 + EX28DRAFT_0611 0.63 -2.5
609,849 + EX28DRAFT_0611 0.69 -1.8
609,900 + EX28DRAFT_0611 0.73 -0.5
609,931 - EX28DRAFT_0611 0.75 -2.6
610,332 + EX28DRAFT_0612 0.23 +1.8
610,332 + EX28DRAFT_0612 0.23 +0.3
610,469 - EX28DRAFT_0612 0.54 -0.2
610,469 - EX28DRAFT_0612 0.54 -1.7
610,473 - EX28DRAFT_0612 0.55 +0.0
610,473 - EX28DRAFT_0612 0.55 -1.0
610,599 + EX28DRAFT_0612 0.83 -0.3
610,696 + -0.1
610,696 + -1.6
610,697 - -1.1
610,926 + EX28DRAFT_0613 0.17 -1.4
611,015 + EX28DRAFT_0613 0.23 -0.8
611,015 + EX28DRAFT_0613 0.23 -0.1
611,015 + EX28DRAFT_0613 0.23 +0.6
611,016 - EX28DRAFT_0613 0.23 +0.1
611,016 - EX28DRAFT_0613 0.23 -0.2
611,082 + EX28DRAFT_0613 0.28 -2.0
611,082 + EX28DRAFT_0613 0.28 -1.3
611,087 + EX28DRAFT_0613 0.29 -1.5
611,089 + EX28DRAFT_0613 0.29 -0.5
611,090 - EX28DRAFT_0613 0.29 -0.5

Or see this region's nucleotide sequence