Experiment: MS_media with m-arsenite 1 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt EX28DRAFT_0546 and EX28DRAFT_0547 are separated by 119 nucleotides EX28DRAFT_0547 and EX28DRAFT_0548 are separated by 92 nucleotides
EX28DRAFT_0546: EX28DRAFT_0546 - D-alanyl-D-alanine carboxypeptidase, at 540,665 to 541,831
_0546
EX28DRAFT_0547: EX28DRAFT_0547 - DNA gyrase inhibitor, at 541,951 to 542,424
_0547
EX28DRAFT_0548: EX28DRAFT_0548 - Predicted membrane protein, at 542,517 to 543,575
_0548
Position (kb) 541
542
543 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 541.259 kb on + strand, within EX28DRAFT_0546 at 541.259 kb on + strand, within EX28DRAFT_0546 at 541.264 kb on + strand, within EX28DRAFT_0546 at 541.264 kb on + strand, within EX28DRAFT_0546 at 541.264 kb on + strand, within EX28DRAFT_0546 at 541.265 kb on - strand, within EX28DRAFT_0546 at 541.265 kb on - strand, within EX28DRAFT_0546 at 541.265 kb on - strand, within EX28DRAFT_0546 at 541.265 kb on - strand, within EX28DRAFT_0546 at 541.268 kb on + strand, within EX28DRAFT_0546 at 541.268 kb on + strand, within EX28DRAFT_0546 at 541.268 kb on + strand, within EX28DRAFT_0546 at 541.269 kb on - strand, within EX28DRAFT_0546 at 541.271 kb on - strand, within EX28DRAFT_0546 at 541.333 kb on + strand, within EX28DRAFT_0546 at 541.369 kb on + strand, within EX28DRAFT_0546 at 541.369 kb on + strand, within EX28DRAFT_0546 at 541.370 kb on - strand, within EX28DRAFT_0546 at 541.514 kb on - strand, within EX28DRAFT_0546 at 541.558 kb on + strand, within EX28DRAFT_0546 at 541.724 kb on + strand at 541.725 kb on - strand at 541.725 kb on - strand at 541.830 kb on - strand at 541.873 kb on + strand at 541.873 kb on + strand at 541.873 kb on + strand at 541.874 kb on - strand at 541.958 kb on - strand at 541.983 kb on + strand at 541.984 kb on - strand at 541.984 kb on - strand at 542.105 kb on - strand, within EX28DRAFT_0547 at 542.105 kb on - strand, within EX28DRAFT_0547 at 542.293 kb on - strand, within EX28DRAFT_0547 at 542.293 kb on - strand, within EX28DRAFT_0547 at 542.313 kb on + strand, within EX28DRAFT_0547 at 542.313 kb on + strand, within EX28DRAFT_0547 at 542.313 kb on + strand, within EX28DRAFT_0547 at 542.314 kb on - strand, within EX28DRAFT_0547 at 542.318 kb on - strand, within EX28DRAFT_0547 at 542.395 kb on + strand at 542.395 kb on + strand at 542.395 kb on + strand at 542.395 kb on + strand at 542.396 kb on - strand at 542.396 kb on - strand at 542.412 kb on + strand at 542.413 kb on - strand at 542.501 kb on + strand at 542.537 kb on - strand at 542.559 kb on + strand at 542.560 kb on - strand at 542.620 kb on + strand at 542.888 kb on + strand, within EX28DRAFT_0548 at 542.889 kb on - strand, within EX28DRAFT_0548 at 543.029 kb on + strand, within EX28DRAFT_0548 at 543.029 kb on + strand, within EX28DRAFT_0548 at 543.046 kb on - strand, within EX28DRAFT_0548 at 543.046 kb on - strand, within EX28DRAFT_0548 at 543.376 kb on - strand, within EX28DRAFT_0548
Per-strain Table
Position Strand Gene LocusTag Fraction MS_media with m-arsenite 1 mM remove 541,259 + EX28DRAFT_0546 0.51 +0.7 541,259 + EX28DRAFT_0546 0.51 +0.1 541,264 + EX28DRAFT_0546 0.51 -0.3 541,264 + EX28DRAFT_0546 0.51 -0.3 541,264 + EX28DRAFT_0546 0.51 +0.2 541,265 - EX28DRAFT_0546 0.51 +0.3 541,265 - EX28DRAFT_0546 0.51 -0.3 541,265 - EX28DRAFT_0546 0.51 -2.0 541,265 - EX28DRAFT_0546 0.51 -0.4 541,268 + EX28DRAFT_0546 0.52 +1.1 541,268 + EX28DRAFT_0546 0.52 +0.6 541,268 + EX28DRAFT_0546 0.52 -0.2 541,269 - EX28DRAFT_0546 0.52 -2.9 541,271 - EX28DRAFT_0546 0.52 -0.4 541,333 + EX28DRAFT_0546 0.57 +1.2 541,369 + EX28DRAFT_0546 0.60 -0.4 541,369 + EX28DRAFT_0546 0.60 +1.0 541,370 - EX28DRAFT_0546 0.60 +1.1 541,514 - EX28DRAFT_0546 0.73 +0.1 541,558 + EX28DRAFT_0546 0.77 -0.4 541,724 + -0.5 541,725 - -0.3 541,725 - +0.8 541,830 - -1.3 541,873 + +0.1 541,873 + +0.0 541,873 + +0.4 541,874 - -1.7 541,958 - +1.7 541,983 + -2.2 541,984 - +0.6 541,984 - -2.9 542,105 - EX28DRAFT_0547 0.32 -0.9 542,105 - EX28DRAFT_0547 0.32 +0.2 542,293 - EX28DRAFT_0547 0.72 +0.1 542,293 - EX28DRAFT_0547 0.72 -0.7 542,313 + EX28DRAFT_0547 0.76 -1.0 542,313 + EX28DRAFT_0547 0.76 -2.7 542,313 + EX28DRAFT_0547 0.76 +1.6 542,314 - EX28DRAFT_0547 0.77 +1.9 542,318 - EX28DRAFT_0547 0.77 +0.9 542,395 + -0.2 542,395 + -1.2 542,395 + +0.7 542,395 + -0.2 542,396 - -0.4 542,396 - -1.8 542,412 + -0.4 542,413 - +0.4 542,501 + +0.0 542,537 - +1.2 542,559 + -0.1 542,560 - +1.8 542,620 + +0.2 542,888 + EX28DRAFT_0548 0.35 -0.8 542,889 - EX28DRAFT_0548 0.35 +0.4 543,029 + EX28DRAFT_0548 0.48 -0.8 543,029 + EX28DRAFT_0548 0.48 +1.4 543,046 - EX28DRAFT_0548 0.50 +0.3 543,046 - EX28DRAFT_0548 0.50 -0.3 543,376 - EX28DRAFT_0548 0.81 -0.7
Or see this region's nucleotide sequence