Experiment: MS_media with m-arsenite 1 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt EX28DRAFT_0432 and EX28DRAFT_0433 overlap by 17 nucleotides EX28DRAFT_0433 and EX28DRAFT_0434 overlap by 26 nucleotides EX28DRAFT_0434 and EX28DRAFT_0435 are separated by 69 nucleotides
EX28DRAFT_0432: EX28DRAFT_0432 - ABC-type proline/glycine betaine transport systems, ATPase components, at 413,569 to 414,519
_0432
EX28DRAFT_0433: EX28DRAFT_0433 - ABC-type proline/glycine betaine transport systems, permease component, at 414,503 to 415,240
_0433
EX28DRAFT_0434: EX28DRAFT_0434 - hypothetical protein, at 415,215 to 415,328
_0434
EX28DRAFT_0435: EX28DRAFT_0435 - Predicted transcriptional regulators, at 415,398 to 416,138
_0435
Position (kb) 415
416 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 414.233 kb on + strand, within EX28DRAFT_0432 at 414.236 kb on + strand, within EX28DRAFT_0432 at 414.237 kb on - strand, within EX28DRAFT_0432 at 414.237 kb on - strand, within EX28DRAFT_0432 at 414.237 kb on - strand, within EX28DRAFT_0432 at 414.325 kb on + strand, within EX28DRAFT_0432 at 414.326 kb on - strand, within EX28DRAFT_0432 at 414.326 kb on - strand, within EX28DRAFT_0432 at 414.326 kb on - strand, within EX28DRAFT_0432 at 414.326 kb on - strand, within EX28DRAFT_0432 at 414.326 kb on - strand, within EX28DRAFT_0432 at 414.327 kb on + strand, within EX28DRAFT_0432 at 414.328 kb on - strand, within EX28DRAFT_0432 at 414.640 kb on + strand, within EX28DRAFT_0433 at 414.641 kb on - strand, within EX28DRAFT_0433 at 414.641 kb on - strand, within EX28DRAFT_0433 at 414.643 kb on + strand, within EX28DRAFT_0433 at 414.936 kb on + strand, within EX28DRAFT_0433 at 415.106 kb on - strand, within EX28DRAFT_0433 at 415.108 kb on - strand, within EX28DRAFT_0433 at 415.129 kb on + strand, within EX28DRAFT_0433 at 415.137 kb on - strand, within EX28DRAFT_0433 at 415.137 kb on - strand, within EX28DRAFT_0433 at 415.211 kb on + strand at 415.304 kb on + strand, within EX28DRAFT_0434 at 415.357 kb on + strand at 415.358 kb on - strand at 415.358 kb on - strand at 415.389 kb on + strand at 415.389 kb on + strand at 415.390 kb on - strand at 415.533 kb on - strand, within EX28DRAFT_0435 at 415.693 kb on + strand, within EX28DRAFT_0435 at 415.693 kb on + strand, within EX28DRAFT_0435 at 415.693 kb on + strand, within EX28DRAFT_0435 at 415.693 kb on + strand, within EX28DRAFT_0435 at 415.694 kb on - strand, within EX28DRAFT_0435 at 415.694 kb on - strand, within EX28DRAFT_0435 at 415.694 kb on - strand, within EX28DRAFT_0435 at 416.049 kb on - strand, within EX28DRAFT_0435 at 416.049 kb on - strand, within EX28DRAFT_0435 at 416.121 kb on + strand at 416.121 kb on + strand at 416.122 kb on - strand at 416.128 kb on + strand at 416.170 kb on - strand at 416.175 kb on + strand at 416.175 kb on + strand at 416.175 kb on + strand at 416.306 kb on - strand at 416.322 kb on - strand at 416.322 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction MS_media with m-arsenite 1 mM remove 414,233 + EX28DRAFT_0432 0.70 -0.1 414,236 + EX28DRAFT_0432 0.70 +0.1 414,237 - EX28DRAFT_0432 0.70 -0.6 414,237 - EX28DRAFT_0432 0.70 +0.7 414,237 - EX28DRAFT_0432 0.70 +0.6 414,325 + EX28DRAFT_0432 0.79 +0.9 414,326 - EX28DRAFT_0432 0.80 -0.8 414,326 - EX28DRAFT_0432 0.80 -3.0 414,326 - EX28DRAFT_0432 0.80 +0.3 414,326 - EX28DRAFT_0432 0.80 -0.4 414,326 - EX28DRAFT_0432 0.80 -0.1 414,327 + EX28DRAFT_0432 0.80 +0.3 414,328 - EX28DRAFT_0432 0.80 +0.2 414,640 + EX28DRAFT_0433 0.19 -0.2 414,641 - EX28DRAFT_0433 0.19 +1.7 414,641 - EX28DRAFT_0433 0.19 +1.3 414,643 + EX28DRAFT_0433 0.19 +0.3 414,936 + EX28DRAFT_0433 0.59 +0.6 415,106 - EX28DRAFT_0433 0.82 +0.2 415,108 - EX28DRAFT_0433 0.82 -0.8 415,129 + EX28DRAFT_0433 0.85 -1.5 415,137 - EX28DRAFT_0433 0.86 +0.9 415,137 - EX28DRAFT_0433 0.86 +0.4 415,211 + +0.1 415,304 + EX28DRAFT_0434 0.78 +0.9 415,357 + +0.4 415,358 - -3.7 415,358 - -1.4 415,389 + -0.2 415,389 + +1.0 415,390 - +0.5 415,533 - EX28DRAFT_0435 0.18 -0.4 415,693 + EX28DRAFT_0435 0.40 +0.4 415,693 + EX28DRAFT_0435 0.40 +1.8 415,693 + EX28DRAFT_0435 0.40 +0.2 415,693 + EX28DRAFT_0435 0.40 +0.0 415,694 - EX28DRAFT_0435 0.40 -1.3 415,694 - EX28DRAFT_0435 0.40 +1.1 415,694 - EX28DRAFT_0435 0.40 +0.6 416,049 - EX28DRAFT_0435 0.88 +0.6 416,049 - EX28DRAFT_0435 0.88 +0.2 416,121 + +0.6 416,121 + -0.6 416,122 - +0.0 416,128 + +0.4 416,170 - +0.7 416,175 + -0.3 416,175 + +0.3 416,175 + +0.7 416,306 - -0.5 416,322 - -1.0 416,322 - +1.2
Or see this region's nucleotide sequence