Strain Fitness in Enterobacter asburiae PDN3 around EX28DRAFT_0389

Experiment: MS_media with m-arsenite 1 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntEX28DRAFT_0388 and EX28DRAFT_0389 are separated by 124 nucleotidesEX28DRAFT_0389 and EX28DRAFT_0390 are separated by 205 nucleotides EX28DRAFT_0388: EX28DRAFT_0388 - Putative GTPases (G3E family), at 361,512 to 362,498 _0388 EX28DRAFT_0389: EX28DRAFT_0389 - Mannitol-1-phosphate/altronate dehydrogenases, at 362,623 to 364,089 _0389 EX28DRAFT_0390: EX28DRAFT_0390 - mannonate dehydratase, at 364,295 to 365,485 _0390 Position (kb) 362 363 364 365Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2 3at 361.768 kb on - strand, within EX28DRAFT_0388at 361.808 kb on + strand, within EX28DRAFT_0388at 362.170 kb on + strand, within EX28DRAFT_0388at 362.188 kb on - strand, within EX28DRAFT_0388at 362.526 kb on + strandat 362.526 kb on + strandat 362.526 kb on + strandat 362.526 kb on + strandat 362.527 kb on - strandat 362.527 kb on - strandat 362.528 kb on + strandat 362.534 kb on + strandat 362.535 kb on - strandat 362.681 kb on + strandat 362.682 kb on - strandat 362.787 kb on + strand, within EX28DRAFT_0389at 363.073 kb on + strand, within EX28DRAFT_0389at 363.074 kb on - strand, within EX28DRAFT_0389at 363.147 kb on + strand, within EX28DRAFT_0389at 363.159 kb on - strand, within EX28DRAFT_0389at 363.179 kb on + strand, within EX28DRAFT_0389at 363.180 kb on - strand, within EX28DRAFT_0389at 363.180 kb on - strand, within EX28DRAFT_0389at 363.297 kb on + strand, within EX28DRAFT_0389at 363.726 kb on + strand, within EX28DRAFT_0389at 363.756 kb on + strand, within EX28DRAFT_0389at 363.922 kb on - strand, within EX28DRAFT_0389at 364.095 kb on - strandat 364.211 kb on + strandat 364.211 kb on + strandat 364.211 kb on + strandat 364.211 kb on + strandat 364.211 kb on + strandat 364.211 kb on + strandat 364.211 kb on + strandat 364.211 kb on + strandat 364.211 kb on + strandat 364.211 kb on + strandat 364.211 kb on + strandat 364.212 kb on - strandat 364.212 kb on - strandat 364.212 kb on - strandat 364.212 kb on - strandat 364.212 kb on - strandat 364.212 kb on - strandat 364.212 kb on - strandat 364.242 kb on + strandat 364.243 kb on - strandat 364.317 kb on - strandat 364.393 kb on + strandat 364.411 kb on - strandat 364.526 kb on + strand, within EX28DRAFT_0390at 364.527 kb on - strand, within EX28DRAFT_0390at 364.543 kb on + strand, within EX28DRAFT_0390at 364.543 kb on + strand, within EX28DRAFT_0390at 364.589 kb on - strand, within EX28DRAFT_0390at 364.742 kb on + strand, within EX28DRAFT_0390at 364.743 kb on - strand, within EX28DRAFT_0390at 364.822 kb on + strand, within EX28DRAFT_0390at 364.822 kb on + strand, within EX28DRAFT_0390at 364.857 kb on - strand, within EX28DRAFT_0390at 364.859 kb on - strand, within EX28DRAFT_0390at 364.906 kb on + strand, within EX28DRAFT_0390at 365.053 kb on + strand, within EX28DRAFT_0390at 365.053 kb on + strand, within EX28DRAFT_0390at 365.054 kb on - strand, within EX28DRAFT_0390at 365.054 kb on - strand, within EX28DRAFT_0390at 365.076 kb on + strand, within EX28DRAFT_0390at 365.087 kb on + strand, within EX28DRAFT_0390at 365.087 kb on + strand, within EX28DRAFT_0390at 365.087 kb on + strand, within EX28DRAFT_0390at 365.087 kb on + strand, within EX28DRAFT_0390at 365.088 kb on - strand, within EX28DRAFT_0390at 365.088 kb on - strand, within EX28DRAFT_0390at 365.088 kb on - strand, within EX28DRAFT_0390

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Per-strain Table

Position Strand Gene LocusTag Fraction MS_media with m-arsenite 1 mM
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361,768 - EX28DRAFT_0388 0.26 -2.1
361,808 + EX28DRAFT_0388 0.30 -0.9
362,170 + EX28DRAFT_0388 0.67 +0.5
362,188 - EX28DRAFT_0388 0.68 -0.2
362,526 + +2.8
362,526 + -0.3
362,526 + +0.7
362,526 + +0.9
362,527 - +0.5
362,527 - -0.1
362,528 + +0.1
362,534 + -1.8
362,535 - +0.3
362,681 + -0.2
362,682 - -0.1
362,787 + EX28DRAFT_0389 0.11 -1.2
363,073 + EX28DRAFT_0389 0.31 -0.9
363,074 - EX28DRAFT_0389 0.31 +0.2
363,147 + EX28DRAFT_0389 0.36 +0.5
363,159 - EX28DRAFT_0389 0.37 +0.9
363,179 + EX28DRAFT_0389 0.38 +0.5
363,180 - EX28DRAFT_0389 0.38 -3.9
363,180 - EX28DRAFT_0389 0.38 +0.0
363,297 + EX28DRAFT_0389 0.46 -0.7
363,726 + EX28DRAFT_0389 0.75 +0.0
363,756 + EX28DRAFT_0389 0.77 -2.9
363,922 - EX28DRAFT_0389 0.89 -1.4
364,095 - +0.7
364,211 + +0.2
364,211 + -0.7
364,211 + +0.2
364,211 + -1.3
364,211 + -2.0
364,211 + -0.7
364,211 + +0.7
364,211 + -0.1
364,211 + +0.8
364,211 + +0.1
364,211 + +0.0
364,212 - +0.8
364,212 - -0.9
364,212 - +0.6
364,212 - +0.1
364,212 - -0.8
364,212 - -0.5
364,212 - -0.4
364,242 + -0.8
364,243 - +1.2
364,317 - +1.0
364,393 + -0.4
364,411 - +0.8
364,526 + EX28DRAFT_0390 0.19 -0.7
364,527 - EX28DRAFT_0390 0.19 +0.5
364,543 + EX28DRAFT_0390 0.21 +0.9
364,543 + EX28DRAFT_0390 0.21 -0.4
364,589 - EX28DRAFT_0390 0.25 +0.2
364,742 + EX28DRAFT_0390 0.38 -2.2
364,743 - EX28DRAFT_0390 0.38 -0.5
364,822 + EX28DRAFT_0390 0.44 +0.1
364,822 + EX28DRAFT_0390 0.44 +0.7
364,857 - EX28DRAFT_0390 0.47 -0.5
364,859 - EX28DRAFT_0390 0.47 -0.5
364,906 + EX28DRAFT_0390 0.51 -0.2
365,053 + EX28DRAFT_0390 0.64 -0.0
365,053 + EX28DRAFT_0390 0.64 +0.3
365,054 - EX28DRAFT_0390 0.64 -0.3
365,054 - EX28DRAFT_0390 0.64 +1.7
365,076 + EX28DRAFT_0390 0.66 +0.0
365,087 + EX28DRAFT_0390 0.66 -0.2
365,087 + EX28DRAFT_0390 0.66 +0.2
365,087 + EX28DRAFT_0390 0.66 -1.1
365,087 + EX28DRAFT_0390 0.66 +0.1
365,088 - EX28DRAFT_0390 0.67 +0.3
365,088 - EX28DRAFT_0390 0.67 +0.2
365,088 - EX28DRAFT_0390 0.67 -0.4

Or see this region's nucleotide sequence