Strain Fitness in Enterobacter asburiae PDN3 around EX28DRAFT_0364

Experiment: MS_media with m-arsenite 1 mM

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntEX28DRAFT_0363 and EX28DRAFT_0364 overlap by 1 nucleotidesEX28DRAFT_0364 and EX28DRAFT_0365 are separated by 69 nucleotides EX28DRAFT_0363: EX28DRAFT_0363 - O-6-methylguanine DNA methyltransferase, at 333,506 to 334,564 _0363 EX28DRAFT_0364: EX28DRAFT_0364 - Alkylated DNA repair protein, at 334,564 to 335,220 _0364 EX28DRAFT_0365: EX28DRAFT_0365 - cyclic peptide transporter, at 335,290 to 336,933 _0365 Position (kb) 334 335 336Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2 3 4at 333.865 kb on + strand, within EX28DRAFT_0363at 333.998 kb on + strand, within EX28DRAFT_0363at 333.998 kb on + strand, within EX28DRAFT_0363at 333.998 kb on + strand, within EX28DRAFT_0363at 333.999 kb on - strand, within EX28DRAFT_0363at 333.999 kb on - strand, within EX28DRAFT_0363at 334.071 kb on - strand, within EX28DRAFT_0363at 334.079 kb on - strand, within EX28DRAFT_0363at 334.203 kb on - strand, within EX28DRAFT_0363at 334.273 kb on - strand, within EX28DRAFT_0363at 334.790 kb on - strand, within EX28DRAFT_0364at 334.877 kb on + strand, within EX28DRAFT_0364at 334.889 kb on - strand, within EX28DRAFT_0364at 334.990 kb on - strand, within EX28DRAFT_0364at 335.179 kb on - strandat 335.218 kb on + strandat 335.297 kb on + strandat 335.298 kb on - strandat 335.342 kb on + strandat 335.343 kb on - strandat 335.569 kb on - strand, within EX28DRAFT_0365at 335.577 kb on - strand, within EX28DRAFT_0365at 335.643 kb on + strand, within EX28DRAFT_0365at 335.710 kb on + strand, within EX28DRAFT_0365at 335.785 kb on - strand, within EX28DRAFT_0365at 335.803 kb on + strand, within EX28DRAFT_0365at 335.803 kb on + strand, within EX28DRAFT_0365at 335.838 kb on + strand, within EX28DRAFT_0365at 335.838 kb on + strand, within EX28DRAFT_0365at 335.838 kb on + strand, within EX28DRAFT_0365at 335.838 kb on + strand, within EX28DRAFT_0365at 335.839 kb on - strand, within EX28DRAFT_0365at 335.846 kb on - strand, within EX28DRAFT_0365at 335.847 kb on + strand, within EX28DRAFT_0365at 335.864 kb on + strand, within EX28DRAFT_0365at 335.913 kb on + strand, within EX28DRAFT_0365at 335.913 kb on + strand, within EX28DRAFT_0365at 335.920 kb on - strand, within EX28DRAFT_0365at 335.929 kb on + strand, within EX28DRAFT_0365at 335.929 kb on + strand, within EX28DRAFT_0365at 335.929 kb on + strand, within EX28DRAFT_0365at 335.930 kb on - strand, within EX28DRAFT_0365at 335.931 kb on + strand, within EX28DRAFT_0365at 335.961 kb on + strand, within EX28DRAFT_0365at 335.961 kb on + strand, within EX28DRAFT_0365at 335.961 kb on + strand, within EX28DRAFT_0365at 335.962 kb on - strand, within EX28DRAFT_0365at 335.962 kb on - strand, within EX28DRAFT_0365at 335.962 kb on - strand, within EX28DRAFT_0365at 335.964 kb on + strand, within EX28DRAFT_0365at 336.012 kb on + strand, within EX28DRAFT_0365at 336.012 kb on + strand, within EX28DRAFT_0365at 336.038 kb on + strand, within EX28DRAFT_0365at 336.039 kb on - strand, within EX28DRAFT_0365at 336.177 kb on + strand, within EX28DRAFT_0365at 336.177 kb on + strand, within EX28DRAFT_0365at 336.178 kb on - strand, within EX28DRAFT_0365at 336.178 kb on - strand, within EX28DRAFT_0365at 336.210 kb on + strand, within EX28DRAFT_0365

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction MS_media with m-arsenite 1 mM
remove
333,865 + EX28DRAFT_0363 0.34 -1.1
333,998 + EX28DRAFT_0363 0.46 -2.3
333,998 + EX28DRAFT_0363 0.46 -0.5
333,998 + EX28DRAFT_0363 0.46 +0.1
333,999 - EX28DRAFT_0363 0.47 +0.0
333,999 - EX28DRAFT_0363 0.47 +0.2
334,071 - EX28DRAFT_0363 0.53 +0.0
334,079 - EX28DRAFT_0363 0.54 -1.7
334,203 - EX28DRAFT_0363 0.66 +0.4
334,273 - EX28DRAFT_0363 0.72 -4.6
334,790 - EX28DRAFT_0364 0.34 +1.2
334,877 + EX28DRAFT_0364 0.48 +0.0
334,889 - EX28DRAFT_0364 0.49 -2.5
334,990 - EX28DRAFT_0364 0.65 +1.1
335,179 - -0.8
335,218 + -2.5
335,297 + +0.3
335,298 - +0.3
335,342 + +0.4
335,343 - -0.0
335,569 - EX28DRAFT_0365 0.17 +3.8
335,577 - EX28DRAFT_0365 0.17 -3.0
335,643 + EX28DRAFT_0365 0.21 -2.5
335,710 + EX28DRAFT_0365 0.26 -0.9
335,785 - EX28DRAFT_0365 0.30 -0.2
335,803 + EX28DRAFT_0365 0.31 +0.6
335,803 + EX28DRAFT_0365 0.31 -0.4
335,838 + EX28DRAFT_0365 0.33 +0.7
335,838 + EX28DRAFT_0365 0.33 -2.1
335,838 + EX28DRAFT_0365 0.33 +0.8
335,838 + EX28DRAFT_0365 0.33 +0.4
335,839 - EX28DRAFT_0365 0.33 -3.3
335,846 - EX28DRAFT_0365 0.34 -1.8
335,847 + EX28DRAFT_0365 0.34 -0.4
335,864 + EX28DRAFT_0365 0.35 +0.3
335,913 + EX28DRAFT_0365 0.38 +1.0
335,913 + EX28DRAFT_0365 0.38 +0.9
335,920 - EX28DRAFT_0365 0.38 -0.2
335,929 + EX28DRAFT_0365 0.39 +0.4
335,929 + EX28DRAFT_0365 0.39 -0.3
335,929 + EX28DRAFT_0365 0.39 +1.0
335,930 - EX28DRAFT_0365 0.39 +0.3
335,931 + EX28DRAFT_0365 0.39 +0.8
335,961 + EX28DRAFT_0365 0.41 -0.1
335,961 + EX28DRAFT_0365 0.41 +1.9
335,961 + EX28DRAFT_0365 0.41 -0.2
335,962 - EX28DRAFT_0365 0.41 +0.0
335,962 - EX28DRAFT_0365 0.41 -0.0
335,962 - EX28DRAFT_0365 0.41 -0.0
335,964 + EX28DRAFT_0365 0.41 +0.3
336,012 + EX28DRAFT_0365 0.44 -1.0
336,012 + EX28DRAFT_0365 0.44 -0.1
336,038 + EX28DRAFT_0365 0.45 -0.8
336,039 - EX28DRAFT_0365 0.46 -0.5
336,177 + EX28DRAFT_0365 0.54 +0.2
336,177 + EX28DRAFT_0365 0.54 +0.2
336,178 - EX28DRAFT_0365 0.54 -1.6
336,178 - EX28DRAFT_0365 0.54 -0.5
336,210 + EX28DRAFT_0365 0.56 +0.1

Or see this region's nucleotide sequence