Experiment: MS_media with m-arsenite 1 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt EX28DRAFT_0166 and EX28DRAFT_0167 are separated by 207 nucleotides EX28DRAFT_0167 and EX28DRAFT_0168 overlap by 4 nucleotides
EX28DRAFT_0166: EX28DRAFT_0166 - polyphosphate kinase 1, at 113,789 to 115,849
_0166
EX28DRAFT_0167: EX28DRAFT_0167 - phosphoribosylglycinamide formyltransferase, formyltetrahydrofolate-dependent, at 116,057 to 116,698
_0167
EX28DRAFT_0168: EX28DRAFT_0168 - phosphoribosylformylglycinamidine cyclo-ligase (EC 6.3.3.1), at 116,695 to 117,732
_0168
Position (kb)
116
117 Strain fitness (log2 ratio)
-5
-4
-3
-2
-1
0
1
2 at 115.153 kb on - strand, within EX28DRAFT_0166 at 115.249 kb on + strand, within EX28DRAFT_0166 at 115.389 kb on + strand, within EX28DRAFT_0166 at 115.389 kb on + strand, within EX28DRAFT_0166 at 115.390 kb on - strand, within EX28DRAFT_0166 at 115.444 kb on + strand, within EX28DRAFT_0166 at 115.462 kb on - strand, within EX28DRAFT_0166 at 115.462 kb on - strand, within EX28DRAFT_0166 at 115.567 kb on - strand, within EX28DRAFT_0166 at 115.644 kb on - strand at 115.701 kb on + strand at 115.702 kb on - strand at 115.726 kb on - strand at 115.787 kb on + strand at 115.788 kb on - strand at 115.798 kb on + strand at 115.814 kb on + strand at 115.814 kb on + strand at 115.828 kb on + strand at 115.830 kb on + strand at 115.831 kb on - strand at 115.885 kb on + strand at 115.886 kb on - strand at 115.886 kb on - strand at 115.903 kb on - strand at 115.925 kb on + strand at 115.925 kb on + strand at 115.926 kb on - strand at 115.926 kb on - strand at 116.015 kb on + strand at 116.015 kb on + strand at 116.015 kb on + strand at 116.015 kb on + strand at 116.015 kb on + strand at 116.016 kb on - strand at 116.051 kb on - strand at 116.051 kb on - strand at 116.058 kb on + strand at 116.433 kb on + strand, within EX28DRAFT_0167
Per-strain Table
Position Strand Gene LocusTag Fraction MS_media with m-arsenite 1 mM remove 115,153 - EX28DRAFT_0166 0.66 -3.0 115,249 + EX28DRAFT_0166 0.71 -3.6 115,389 + EX28DRAFT_0166 0.78 -2.6 115,389 + EX28DRAFT_0166 0.78 +1.4 115,390 - EX28DRAFT_0166 0.78 -2.2 115,444 + EX28DRAFT_0166 0.80 -0.9 115,462 - EX28DRAFT_0166 0.81 -3.8 115,462 - EX28DRAFT_0166 0.81 +0.1 115,567 - EX28DRAFT_0166 0.86 -0.7 115,644 - +0.0 115,701 + -4.6 115,702 - -2.9 115,726 - -3.7 115,787 + -3.8 115,788 - -3.9 115,798 + -3.1 115,814 + -0.9 115,814 + -5.4 115,828 + -1.0 115,830 + -2.6 115,831 - -2.2 115,885 + -2.7 115,886 - +0.1 115,886 - +0.1 115,903 - -3.0 115,925 + -2.3 115,925 + -3.4 115,926 - -5.0 115,926 - +0.2 116,015 + -1.1 116,015 + +0.8 116,015 + +0.7 116,015 + -1.4 116,015 + +0.4 116,016 - -1.9 116,051 - -0.0 116,051 - +1.8 116,058 + +0.3 116,433 + EX28DRAFT_0167 0.59 -5.2
Or see this region's nucleotide sequence