Experiment: MS_media with m-arsenite 1 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt EX28DRAFT_0157 and EX28DRAFT_0158 are separated by 115 nucleotides EX28DRAFT_0158 and EX28DRAFT_0159 are separated by 10 nucleotides EX28DRAFT_0159 and EX28DRAFT_0160 are separated by 11 nucleotides EX28DRAFT_0160 and EX28DRAFT_0161 are separated by 50 nucleotides
EX28DRAFT_0157: EX28DRAFT_0157 - Arabinose efflux permease, at 104,190 to 105,404
_0157
EX28DRAFT_0158: EX28DRAFT_0158 - transcriptional regulator, HxlR family, at 105,520 to 105,963
_0158
EX28DRAFT_0159: EX28DRAFT_0159 - Predicted hydrolases or acyltransferases (alpha/beta hydrolase superfamily), at 105,974 to 106,717
_0159
EX28DRAFT_0160: EX28DRAFT_0160 - hypothetical protein, at 106,729 to 107,196
_0160
EX28DRAFT_0161: EX28DRAFT_0161 - Cyanate permease, at 107,247 to 108,476
_0161
Position (kb) 105
106
107 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2 at 105.062 kb on + strand, within EX28DRAFT_0157 at 105.150 kb on + strand, within EX28DRAFT_0157 at 105.151 kb on - strand, within EX28DRAFT_0157 at 105.308 kb on - strand at 105.308 kb on - strand at 105.310 kb on + strand at 105.405 kb on - strand at 105.405 kb on - strand at 105.459 kb on + strand at 105.460 kb on - strand at 105.485 kb on + strand at 105.491 kb on + strand at 105.492 kb on - strand at 105.537 kb on - strand at 105.547 kb on + strand at 105.547 kb on + strand at 105.547 kb on + strand at 105.548 kb on - strand at 105.610 kb on - strand, within EX28DRAFT_0158 at 105.722 kb on + strand, within EX28DRAFT_0158 at 105.757 kb on + strand, within EX28DRAFT_0158 at 105.758 kb on - strand, within EX28DRAFT_0158 at 105.758 kb on - strand, within EX28DRAFT_0158 at 105.758 kb on - strand, within EX28DRAFT_0158 at 105.979 kb on + strand at 105.979 kb on + strand at 105.979 kb on + strand at 105.980 kb on - strand at 106.137 kb on + strand, within EX28DRAFT_0159 at 106.289 kb on + strand, within EX28DRAFT_0159 at 106.289 kb on + strand, within EX28DRAFT_0159 at 106.289 kb on + strand, within EX28DRAFT_0159 at 106.289 kb on + strand, within EX28DRAFT_0159 at 106.290 kb on - strand, within EX28DRAFT_0159 at 106.290 kb on - strand, within EX28DRAFT_0159 at 106.310 kb on - strand, within EX28DRAFT_0159 at 106.442 kb on + strand, within EX28DRAFT_0159 at 106.597 kb on + strand, within EX28DRAFT_0159 at 106.651 kb on + strand at 106.701 kb on - strand at 106.816 kb on - strand, within EX28DRAFT_0160 at 106.816 kb on - strand, within EX28DRAFT_0160 at 107.248 kb on + strand at 107.261 kb on + strand at 107.322 kb on + strand at 107.322 kb on + strand at 107.426 kb on + strand, within EX28DRAFT_0161 at 107.506 kb on + strand, within EX28DRAFT_0161 at 107.507 kb on - strand, within EX28DRAFT_0161 at 107.609 kb on + strand, within EX28DRAFT_0161 at 107.609 kb on + strand, within EX28DRAFT_0161 at 107.609 kb on + strand, within EX28DRAFT_0161 at 107.609 kb on + strand, within EX28DRAFT_0161
Per-strain Table
Position Strand Gene LocusTag Fraction MS_media with m-arsenite 1 mM remove 105,062 + EX28DRAFT_0157 0.72 -4.0 105,150 + EX28DRAFT_0157 0.79 +0.1 105,151 - EX28DRAFT_0157 0.79 +0.6 105,308 - +0.3 105,308 - +0.2 105,310 + -0.6 105,405 - +0.8 105,405 - +0.4 105,459 + -3.0 105,460 - -0.6 105,485 + +0.4 105,491 + +0.0 105,492 - +0.4 105,537 - -0.0 105,547 + -0.2 105,547 + +0.3 105,547 + +1.2 105,548 - +1.9 105,610 - EX28DRAFT_0158 0.20 -0.4 105,722 + EX28DRAFT_0158 0.45 -0.1 105,757 + EX28DRAFT_0158 0.53 -1.1 105,758 - EX28DRAFT_0158 0.54 +1.6 105,758 - EX28DRAFT_0158 0.54 +0.4 105,758 - EX28DRAFT_0158 0.54 -0.0 105,979 + +0.5 105,979 + +0.7 105,979 + -0.8 105,980 - +1.0 106,137 + EX28DRAFT_0159 0.22 -0.4 106,289 + EX28DRAFT_0159 0.42 +0.7 106,289 + EX28DRAFT_0159 0.42 +0.1 106,289 + EX28DRAFT_0159 0.42 +0.9 106,289 + EX28DRAFT_0159 0.42 +1.0 106,290 - EX28DRAFT_0159 0.42 +1.3 106,290 - EX28DRAFT_0159 0.42 +0.6 106,310 - EX28DRAFT_0159 0.45 -0.6 106,442 + EX28DRAFT_0159 0.63 -0.5 106,597 + EX28DRAFT_0159 0.84 +0.9 106,651 + +0.0 106,701 - +0.0 106,816 - EX28DRAFT_0160 0.19 -0.3 106,816 - EX28DRAFT_0160 0.19 +2.1 107,248 + -1.2 107,261 + -0.4 107,322 + +2.3 107,322 + +1.6 107,426 + EX28DRAFT_0161 0.15 +0.4 107,506 + EX28DRAFT_0161 0.21 -0.4 107,507 - EX28DRAFT_0161 0.21 -0.9 107,609 + EX28DRAFT_0161 0.29 +0.7 107,609 + EX28DRAFT_0161 0.29 -1.4 107,609 + EX28DRAFT_0161 0.29 +2.1 107,609 + EX28DRAFT_0161 0.29 +0.2
Or see this region's nucleotide sequence